TABLE 3.

Combined MLST and SEQ SNP profiles in relation to human versus nonhuman clusters

SNP profile	SNP profile ID no. (assigned)a	No. human-sourced isolates		% Human-sourced isolates in cluster	No. animal/environment-sourced isolates		% Animal/environment-sourced isolates in cluster	Total no. of isolates
		MLST	SEQ		MLST	SEQ
Profiles with 100% human or animal source and more than five members
TCCACTCG	45	39	1	100			0	40
TCCGCTCG	29	9	15	100			0	24
CTTACCTG	76	22		100			0	22
TCCGCCCG	32	10	3	100			0	13
TCTGCCCG	11	11	4	100			0	15
ATCACTTG	47	9		100			0	9
ACCACTTG	16	8		100			0	8
ACCGCCCG	7			0		6	100	6
Profiles with mixed human and animal sources and more than five members
ACCACCTG	51	54		95	2	1	5	57
TCCATTCG	78	31		94	2		6	33
CCCGCTCG	70	29	2	94		2	6	33
CTCACTCG	37	146		94	9	1	6	156
ATTACCCG	30	47		92	4		8	51
ATCGCCTG	35	9	1	91	1		9	11
ACTGCCTA	61	6		86		1	14	7
ACCACCTA	50	42		84	7	1	16	50
ACTACCCA	60	5		83	1		17	6
ATCACCTG	12	11	1	80	3		20	15
ATCACTCG	39	10		77	3		23	13
ACCGCCTA	23	4		67		2	33	6
CTCGCCTG	34	3	1	67		2	33	6
CCCACCTG	31	24		62	12	3	37	39
CTCACCTG	20	16		59	4	7	41	27
CCTGCCTA	28	3		50	1	2	50	6
ATTACCTG	19	2	1	50	3		50	6
ACCACCCA	54	5		50	5		50	10
ATCACCCG	18	11		48	7	5	52	23
CCCGCCTG	21	4		40	1	5	60	10
ACTGCCCG	49	3		38	2	3	63	8
ATCACCCG	43	1		14	6		86	7
Profiles with 5 or less members
CCCGCCCA	40		1	100			0	1
CTCGCCCG	44	1		100			0	1
ACTACTTG	48		1	100			0	1
ATCGCTCG	52	1		100			0	1
CCCGCCTA	53	1		100			0	1
TCCATCCG	77	1		100			0	1
TCCGCCCA	81		1	100			0	1
CTTACCTA	75	2		100			0	2
CCCGCTTG	71	1	1	100			0	2
TCCGTTCG	80	2		100			0	2
CTTGCCTA	2			0		1	100	1
ACCGCTCG	8			0		1	100	1
CTTGCCTG	13			0		1	100	1
ATCGCCTA	14			0		1	100	1
CTTGCCCA	17			0		1	100	1
CCCACTCG	25			0		1	100	1
CTCACCCG	38			0	1		100	1
CTCACTTG	41			0	1		100	1
ACCGTCTA	58			0		1	100	1
ACCGTTCG	59			0		1	100	1
ACTGCTCG	62			0		1	100	1
ATCGCTTG	64			0		1	100	1
ATTACTCG	67			0		1	100	1
TCCGCCTG	82			0		1	100	1
CCCACTTG	4			0		2	100	2
CTTACCCA	1			0	2	1	100	3
CCTACCCG	5			0		2	100	2
ATTGCCTA	6			0		2	100	2
ATTACCCA	65			0	1	1	100	2
ATTACCTA	66			0	2		100	2
CCTGCCCG	73			0	2	1	100	3
CCCGCCCG	3			0		4	100	4
TCCGTCCG	79		1	50	1		50	2
ATTGCCTG	15	1		50		1	50	2
ACCGCCCA	26		1	50		1	50	2
ACCACCG	55	1		50		1	50	2
ACCGCCCA	56	1		50		1	50	2
TCTACCCG	9	1		33		2	67	3
CCCACCCG	69	1		33		2	67	3
CCTACCCA	72	1		33	2		67	3
CCCACCCA	68	2		67	1		33	3
CCTGCCTA	24	1		25	1	2	75	4
ACCGCCTG	22	1		25		3	75	4
CCCACCTA	33	1		20	4		80	5

^aID, identification.