TABLE 1.
Analytic specificity panel
| Bacterial, fungal, or viral species | Strain or sourcea |
|---|---|
| Bacteria | |
| Acinetobacter baumanii | BEI NR-10146 |
| Acinetobacter calcoaceticus | Clinical strain |
| Actinomyces israelii | ATCC 12102 |
| Actinomyces meyeri | Clinical strain |
| Bacillus cereus | BEI NR-4198 |
| Bacillus subtilis | Clinical strain |
| Bordetella parapertussis | ATCC 151311D |
| Bordetella pertussis | Cepheid |
| Campylobacter jejuni | BEI NR-3057 |
| Chlamydia pneumoniae | Cepheid |
| Citrobacter freundii | Clinical strain |
| Corynebacterium diptheriae | PI 581 |
| Corynebacterium pseudodiptheriticum | ATCC 10700 |
| Corynebacterium xerosis | Clinical strain |
| Enterobacter aerogenes | Clinical strain |
| Enterobacter cloacae | Clinical strain |
| Enterococcus avium | Clinical strain |
| Enterococcus faecalis | Clinical strain |
| Enterococcus faecium | Clinical strain |
| Escherichia coli | Clinical strain |
| Escherichia coli O157H7 | ATCC 35150 |
| Fusobacterium nucleatum | ATCC 25586D |
| Haemophilus influenzae | ATCC 49247 |
| Haemophilus parahemolyticus | ATCC 10014 |
| Haemophilus parainfluenzae | Clinical strain |
| Klebsiella oxytoca | Clinical strain |
| Klebsiella pneumoniae | Clinical strain |
| Legionella pneumophila | ATCC 33152D |
| Leuconostoc mesenteroides | Clinical strain |
| Listeria grayi | ATCC 25401 |
| Listeria monocytogenes | BEI NR-4211 |
| Moraxella catarrhalis | ATCC 8176 |
| Morganella morganii | Clinical strain |
| Mycoplasma pneumoniae | ATCC 15531D |
| Neisseria gonorrhoeae | ATCC 49226 |
| Neisseria lactamica | ATCC 23971 |
| Neisseria meningitidis | Clinical strain |
| Neisseria mucosa | ATCC 69695 |
| Nocardia asteroides | ATCC 19247 |
| Nocardia cyriageorgica | ATCC BAA-1516 |
| Nocardia farcinica | ATCC 3318 |
| Pasteurella multocida | ATCC 3160 |
| Peptostreptococcus anaerobius | ATCC 49031D |
| Porphyromonas gingivalis | ATCC 33277D-5 |
| Prevotella melaninogenica | ATCC 25845D-5 |
| Propionibacterium acnes | Clinical strain |
| Proteus mirabilis | Clinical strain |
| Proteus vulgaris | BEI DD-460 |
| Providencia alcalifaciens | PI 368 |
| Pseudomonas aeruginosa | ATCC 27853 |
| Rhodococcus equi | ATCC 14187 |
| Salmonella enterica | BEI NR-515 |
| Salmonella typhi | Clinical strain |
| Serratia marcescens | Clinical strain |
| Shigella boydii | Clinical strain |
| Shigella flexneri | Clinical strain |
| Staphylococcus aureus | ATCC 25953 |
| Staphylococcus capitis | Clinical strain |
| Staphylococcus epidermidis | ATCC 12228 |
| Staphylococcus haemolyticus | Clinical strain |
| Staphylococcus hominis | Clinical strain |
| Staphylococcus lugdunensis | Clinical strain |
| Stenotrophomonas maltophilia | Clinical strain |
| Streptococcus equi | Clinical strain |
| Streptococcus pyogenes | ATCC 19615 |
| Streptococcus agalactiae | ATCC 12386 |
| Streptococcus constellatus | Clinical strain |
| Streptococcus mitis | Clinical strain |
| Streptococcus mutans | Clinical strain |
| Streptococcus pneumoniae | Clinical strain |
| Streptococcus uberis | Clinical strain |
| Veillonella parvula | ATCC 10790D-5 |
| Stenotrophomonas maltophilia | Clinical strain |
| Yersinia pestis | BEI NR-2644 |
| Fungi | |
| Candida albicans | ATCC 14053D |
| Cryptococcus neoformans | A. Casadevall lab |
| Histoplasma capsulatum | J. Nosanchuk lab |
| Kingella kingae | ATCC 23332D |
| Viruses | |
| Adenovirusb | ZM NATADV1-ST |
| Herpes simplex virus type 1 | Cepheid |
| Herpes simplex virus type 2 | Cepheid |
| Influenza A virusc | Cepheid |
| Influenza B virusc | Cepheid |
| Parainfluenza virus 2b | ZM NATPARA2-ST |
| Parainfluenza virus 3b | ZM NATPARA3-ST |
| Respiratory syncytial virus Ac | Cepheid |
| Respiratory syncytial virus Bc | Cepheid |
| Rhinovirus 6c | Cepheid |
| Rhinovirus 16c | Cepheid |
a
The 89 nontuberculosis bacteria, fungi, and viruses analyzed were obtained from the ATCC and BEI repositories (NIH Biodefense and Emerging Infections Research Resources Repository), the University of Medicine and Dentistry of New Jersey (UMDNJ), Zeptometrix Corporation (Buffalo, NY), Presque Isle Cultures (Erie, PA) (PI), or other collaborators. lab, laboratory. Clinical strains were from UMDNJ, and clinical strain DNA was from reference 2.
b
Whole-particle viral testing, sample from Zeptometrix Corporation.
c
The genomic source material was RNA.