TABLE 1.
NDV sequences included in phylogenetic analysisa
| Tree and isolate | GenBank accession no. | Species |
|---|---|---|
| 374-nt partial fusion tree (Fig. 4) | ||
| G/1998/CA/254847453 | FJ705459 | Cr |
| G/1998/CA/111182194 | DQ837552 | Cr |
| G/1995/CA/254847455 | DQ837552 | Cr |
| G/1995/CA/111052705 | DQ833289 | Cr |
| G/1995/CA/24571080 | AF448486 | Cr |
| G/1995/CA/254847457 | FJ705461 | Cr |
| G/1995/CA/111227011 | DQ839244 | Cr |
| G/1995/CA/19068161 | AY063493 | Cr |
| G/1999/CA/111182200 | DQ837554 | Cr |
| G/1996/CA/111182206 | DQ837556 | Cr |
| G/1996/CA/19068165 | AY063492 | Cr |
| G/1997/US/284019479 | GU332654 | Cr |
| G/2000/CA/111227014 | DQ839245 | Cr |
| G/2000/CA/111052714 | DQ833292 | Cr |
| G/2001/CA/112363411 | DQ857316 | Cr |
| G/2001/CA/111182212 | DQ837558 | Cr |
| G/2001/CA/111052696 | DQ833286 | Cr |
| G/2006/US/284019497 | GU332663 | Cr |
| G/2003/CA/111052693 | DQ833285 | Cr |
| G/2002/US/284019469 | GU332649 | Cr |
| G/2003/CA/111052690 | DQ833284 | Cr |
| G/2003/US/254847459 | FJ705462 | Cr |
| G/1997/US/284019473 | GU332651 | Cr |
| G/1997/US/254847451 | FJ705458 | Cr |
| G/1997/US/254847449 | FJ705457 | Cr |
| G/1997/US/253317827 | GQ288388 | Cr |
| G/1997/US/284019475 | GU332652 | Cr |
| G/1997/US/284019477 | GU332653 | Cr |
| G/1997/US/284019471 | GU332650 | Cr |
| G/1997/US/253317778 | GQ288381 | Cr |
| G/2005/US/254847461 | FJ705463 | Cr |
| G/2008/US/284019505* | GU332667 | Cr |
| G/2008/US/284019503* | GU332666 | Cr |
| G/2008/US/284019529 | GU332676 | Cr |
| G/2008/US/284019483* | GU332656 | Cr |
| G/2008/US/284019489* | GU332659 | Cr |
| G/2008/US/284019481* | GU332655 | Cr |
| G/2008/US/284019526 | GU332675 | Cr |
| G/2008/US/284019532 | GU332677 | Cr |
| G/2008/US/284019499* | GU332664 | Cr |
| G/2008/US/284019523 | GU332674 | Cr |
| G/2008/US/284019507* | GU332668 | Cr |
| G/2008/US/284019487* | GU332658 | Cr |
| G/2008/US/284019485* | GU332657 | Cr |
| G/2008/US/284019495* | GU332662 | Cr |
| G/2008/US/284019491* | GU332660 | Cr |
| G/2008/US/284019511 | GU332670 | Cr |
| G/2008/US/284019514 | GU332671 | Cr |
| G/2008/US/284019501 | GU332665 | Cr |
| G/2008/US/284019517 | GU332672 | Cr |
| G/2008/US/284019520 | GU332673 | Cr |
| G/2008/US/284019493* | GU332661 | Cr |
| G/2008/US/284019509* | GU332669 | Cr |
| G/1990/CA/111227008 | DQ839243 | Cr |
| G/1990/CA/111227005 | DQ839242 | Cr |
| G/1992/CA/111052702 | DQ833288 | Cr |
| G/1992/CA/111052717 | DQ833293 | Cr |
| G/1992/US/254847447 | FJ705456 | Cr |
| G/1992/US/284019467 | GU332648 | Cr |
| G/1992/US/20799674 | AF503643 | Cr |
| G/1992/CA/111182182 | DQ837548 | Cr |
| G/1992/US/33772480 | AY289001 | Tk |
| G/1993/US/45511211 | AY562986 | An |
| G/1971/US/33772440 | AY288987 | Mx |
| G/2000/HN/33772456 | AY288993 | Ck |
| G/1972/US/45511218 | AY562987 | GF |
| G/2000/IT/33772459 | AY288994 | Ck |
| Full fusion tree (Fig. 5) | ||
| G/1999/AU/61393448 | AY935498 | |
| G/1999/AU/61393407 | AY935494 | |
| G/2002/AU/61393362 | AY935490 | |
| G/1998/AU/61393396 | AY935493 | |
| G/1998/AU/61393384 | AY935492 | |
| G/2000/IT/33772465 | AY288996 | Pg |
| G/2000/IT/33772462 | AY288995 | Dv |
| G/1997/AR/52426576 | AY734536 | Pg |
| G/1998/CN/15011276 | AF358785 | Pg |
| G/1990/KE/33772468 | AY288997 | Ck |
| G/1972/US/33772453 | AY288992 | Ck |
| G/2001/RU/58003480 | AY865652 | Tn |
| G/2000/CN/109631561 | DQ485258 | Ck |
| G/2000/CN/109631557 | DQ485256 | Ck |
| G/2000/CN/67550206 | DQ067447 | Ck |
| G/2000/TW/15011278 | AF358786 | Ck |
| G/1998/CN/18042244 | AF456437 | Go |
| G/1997/CN/5702360 | AF162714 | Go |
| G/2006/CN/146359011 | EF592503 | Mn |
| G/2005/CN/146358963 | EF592501 | Md |
| G/2006/CN/146359044 | EF592505 | Md |
| G/2006/CN/146359153 | EF592510 | Md |
| G/2006/CN/146359137 | EF592509 | Tl |
| G/2005/CN/146358939 | EF592500 | Md |
| G/2006/CN/146359067 | EF592506 | Mn |
| G/2005/CN/109255544 | DQ485271 | Ck |
| G/2005/CN/109255550 | DQ485274 | Dv |
| G/2006/CN/124295086 | EF211814 | Go |
| G/2001/CN/18042236 | AF456443 | Go |
| G/2003/CN/109290360 | DQ485230 | Ck |
| G/2003/CN/109631567 | DQ485261 | Ck |
| G/2003/CN/109290367 | DQ485231 | Ck |
| G/2002/CN/109290353 | DQ485229 | Ck |
| G/2001/CN/18042238 | AF456444 | Go |
| G/2005/KR/157674510 | EU140950 | Ck |
| G/2004/KR/157674506 | EU140948 | Ck |
| G/2005/KR/157674508 | EU140949 | Ck |
| G/2000/KR/157674504 | EU140947 | Ck |
| G/1999/CN/15011280 | AF358787 | Ck |
| G/1998/CN/15011295 | AF364835 | Ck |
| G/2000/CN/15011282 | AF358788 | Ck |
| G/2000/CN/28933797 | AF431744 | Go |
| G/2000/CN/18042226 | AF456438 | Go |
| G/1999/CN/68137216 | DQ080015 | Pg |
| G/2006/CN/146359113 | EF592508 | Md |
| G/2005/CN/146358987 | EF592502 | Go |
| G/2005/CN/146358620 | EF521889 | Go |
| G/2006/CN/146359087 | EF592507 | Go |
| G/2006/CN/146359028 | EF592504 | Go |
| G/2001/CN/18042234 | AF456442 | Go |
| G/2001/CN/18042232 | AF456441 | Go |
| G/2001/CN/30025969 | AY253912 | Pt |
| G/2002/CN/148534703 | EF579732 | Ck |
| G/2001/CN/77994255 | DQ227248 | |
| G/2003/CN/121282136 | EF175145 | Mv |
| G/2006/CN/119443716 | EF128055 | Dk |
| G/2006/CN/119443712 | EF128053 | Dk |
| G/2006/CN/119443714 | EF128054 | Dk |
| G/2005/CN/124295072 | EF211807 | Go |
| G/2004/CN/109255540 | DQ485269 | Ck |
| G/2005/CN/86371010 | DQ363536 | |
| G/2006/CN/148534707 | EF579734 | Go |
| G/2005/CN/124295076 | EF211809 | Go |
| G/2006/CN/124295082 | EF211812 | Go |
| G/1996/MX/33772474 | AY288999 | Ck |
| G/2005/CN/124295078 | EF211810 | Go |
| G/2006/CN/124295084 | EF211813 | Go |
| G/2006/CN/148534701 | EF579731 | Ck |
| G/2004/CN/148534705 | EF579733 | Ck |
| G/2002/US/154707827 | EF520718 | Ck |
| G/2002/US/45511218 | AY562987 | Ck |
| G/2000/MX/187711116 | EU518677 | Ck |
| G/1988/MX/187711123 | EU518680 | Ck |
| G/1996/MX/33772474 | AY288999 | Ck |
| G/2004/MX/187711129 | EU518682 | Dv |
| G/2005/MX/187711132 | EU518683 | Ck |
| G/2006/MX/187711135 | EU518684 | Ck |
| G/1971/US/33772440 | AY288987 | Mx |
| G/2006/CN/124295080 | EF211811 | Go |
| G/1992/US/253317820 | GQ288387 | Cr |
| G/1993/US/45511211 | AY562986 | An |
| G/2008/US/284019495 | GU332662 | Cr |
| G/2008/US/284019485 | GU332657 | Cr |
| G/2008/US/284019481 | GU332655 | Cr |
| G/2005/US/253317813 | GQ288386 | Cr |
| G/1997/US/253317778 | GQ288381 | Cr |
| G/1997/US/253317827 | GQ288388 | Cr |
| G/1995/CA/254847455 | DQ837552 | Cr |
| G/1995/CA/253317799 | GQ288384 | Cr |
| G/1998/CA/254847453 | FJ705459 | Cr |
| G/2006/US/284019497 | GU332663 | Cr |
| G/2003/US/254847459 | FJ705462 | Cr |
a
n = 91 sequences for Fig. 2 and n = 68 sequences for Fig. 3. The virus names used in the phylogenetic trees contain G (when they are available in GenBank)/year of collection/the two-digit ISO country code abbreviation/GI accession number (when it is available) or the in-house virus identification number. Isolates are listed in the order in which they appear on the tree. The two-letter species abbreviations are given, when they are known, as follows: Cr, cormorant; Tk, turkey; An, anhinga; Mx, mixed; Ck, chicken; GF, game fowl; Pg, pigeon; Dv, dove; Tn, tern; Go, goose; Mn, mandarin duck; Md, mallard duck; Tl, teal; Pt, parrot; Mv, muscovy duck; Dk, duck. *, isolates first characterized in this study.