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. 2010 May 19;48(7):2413–2423. doi: 10.1128/JCM.02137-09

TABLE 8.

CGH results considering genes absent from the PT4 chromosome that are predicted to be present in the S. Derby strain analyzeda

Systematic Presentb in: Predicted function/annotation
AYGAL3309 NO Unknown
AYSL2646 NO Unknown
SBG0036-0038 NO Sulfatase, sulfatase regulatory, hypothetical proteins
SBG1292 NO MalR, maltose regulatory protein
SBG3911 NO Hypothetical protein
SDT2028-2032 DT104 Phage proteins
SDT2055 DT104 Unknown
SDT2675 DT104 Phage protein
STM0275-0278 LT2, DT104 Putative cytoplasmic, periplasmic proteins
STM0571-0577 LT2, DT104 PTSc system, inner membrane protein
STM1551 LT2, DT104 Putative cytoplasmic protein
STM1896 LT2, DT104 Putative cytoplasmic protein
STM2087-2089 LT2, DT104 Rfb (abequose transferase, synthetase)
STM2694 LT2 Fels-2 phage
STM2793 LT2 Fels-2 phage
STM3291 LT2, DT104 Putative cytoplasmic protein
STM4200-4208 LT2, DT104 Phage proteins
STM4210-4217 LT2, DT104 Putative cytoplasmic, inner membrane proteins
STM4417-4436 LT2, DT104 Inner membrane, DNA binding, enzymes
STM4488 LT2, DT104 Phage protein
STM4503 LT2, DT104 Putative inner membrane protein
STY0333 CT18 SPI-6, SafE
STY0290-0294 CT18, LT2, DT104 SPI-6
STY0297-0298 CT18, LT2, DT104 SPI-6
STY0302-0310 CT18, LT2, DT104 SPI-6
STY0313-0314 CT18 SPI-6
STY0756-0768 CT18, LT2, DT104 DNA recombinase, ABC transporter proteins, sugar transporter
STY0894 CT18 YliI
STY1413 CT18 Hypothetical protein
STY1444 CT18, LT2, DT104 Putative glycolate oxidase
STY1911 CT18, LT2, DT104 Hypothetical protein
STY2043-2044 CT18 Putative bacteriophage protein, putative endolysin
STY2349-2350 CT18 Putative exported proteins
STY2361 CT18 Putative exported protein
STY2364 CT18 Putative exported protein
STY2690 CT18, LT2, DT104 Hypothetical protein
STY3092 CT18 Hypothetical protein
STY3093 CT18, LT2, DT104 Hypothetical protein
STY3277 CT18 SPI-8, unknown
STY3291-3292 CT18 SPI-8, unknown
STY3605-3606 CT18, LT2, DT104 YigG, YigF
STY3617-3619 CT18, LT2, DT104 Conserved hypothetical, membrane proteins
STY3643-3645 CT18 Membrane proteins
STY3675 CT18, LT2 Phage terminase, ATPase subunit
STY3819 CT18, LT2, DT104 Possible membrane transport protein
STY3922 CT18 Probable fimbrial protein
STY3948-3950 CT18 Hypothetical proteins
STY4075 CT18 Hypothetical protein
STY4208 CT18 Putative lipoprotein
STY4601-4602 CT18, LT2 SopE phage (putative regulator of late gene expression)
STY4605-4607 CT18, LT2 SopE phage (structural genes)
STY4613-4617 CT18, LT2 SopE phage (structural genes)
STY4620 CT18, LT2 SopE phage (NucD2 putative lysozyme)
STY4623-4626 CT18 SopE phage (structural genes)
STY4641-4643 CT18, LT2 SopE phage (phage regulatory proteins)
STY4706 CT18 Conserved hypothetical protein
STY4825 CT18 Phage polarity suppression protein
STY4880 CT18, LT2, DT104 YjiW, conserved hypothetical protein
STY4922 CT18 YafM, conserved hypothetical protein
TY2.14 NO Hypothetical protein
a

STY, S. Typhi CT18; STM, S. Typhimurium LT2; SDT, S. Typhimurium DT104; SBG, the strain of S. bongori that has been sequenced; TY, S. Typhi Ty2. AYSL and AYGAL, unannotated features present in the microarray from S. Typhimurium SL1344 and S. Gallinarum, respectively.

b

Indicates when the complete region or gene is present in the sequenced CT18, LT2, and/or DT104 strains.

c

PTS, phosphotransferase system.