TABLE 8.
CGH results considering genes absent from the PT4 chromosome that are predicted to be present in the S. Derby strain analyzeda
| Systematic | Presentb in: | Predicted function/annotation |
|---|---|---|
| AYGAL3309 | NO | Unknown |
| AYSL2646 | NO | Unknown |
| SBG0036-0038 | NO | Sulfatase, sulfatase regulatory, hypothetical proteins |
| SBG1292 | NO | MalR, maltose regulatory protein |
| SBG3911 | NO | Hypothetical protein |
| SDT2028-2032 | DT104 | Phage proteins |
| SDT2055 | DT104 | Unknown |
| SDT2675 | DT104 | Phage protein |
| STM0275-0278 | LT2, DT104 | Putative cytoplasmic, periplasmic proteins |
| STM0571-0577 | LT2, DT104 | PTSc system, inner membrane protein |
| STM1551 | LT2, DT104 | Putative cytoplasmic protein |
| STM1896 | LT2, DT104 | Putative cytoplasmic protein |
| STM2087-2089 | LT2, DT104 | Rfb (abequose transferase, synthetase) |
| STM2694 | LT2 | Fels-2 phage |
| STM2793 | LT2 | Fels-2 phage |
| STM3291 | LT2, DT104 | Putative cytoplasmic protein |
| STM4200-4208 | LT2, DT104 | Phage proteins |
| STM4210-4217 | LT2, DT104 | Putative cytoplasmic, inner membrane proteins |
| STM4417-4436 | LT2, DT104 | Inner membrane, DNA binding, enzymes |
| STM4488 | LT2, DT104 | Phage protein |
| STM4503 | LT2, DT104 | Putative inner membrane protein |
| STY0333 | CT18 | SPI-6, SafE |
| STY0290-0294 | CT18, LT2, DT104 | SPI-6 |
| STY0297-0298 | CT18, LT2, DT104 | SPI-6 |
| STY0302-0310 | CT18, LT2, DT104 | SPI-6 |
| STY0313-0314 | CT18 | SPI-6 |
| STY0756-0768 | CT18, LT2, DT104 | DNA recombinase, ABC transporter proteins, sugar transporter |
| STY0894 | CT18 | YliI |
| STY1413 | CT18 | Hypothetical protein |
| STY1444 | CT18, LT2, DT104 | Putative glycolate oxidase |
| STY1911 | CT18, LT2, DT104 | Hypothetical protein |
| STY2043-2044 | CT18 | Putative bacteriophage protein, putative endolysin |
| STY2349-2350 | CT18 | Putative exported proteins |
| STY2361 | CT18 | Putative exported protein |
| STY2364 | CT18 | Putative exported protein |
| STY2690 | CT18, LT2, DT104 | Hypothetical protein |
| STY3092 | CT18 | Hypothetical protein |
| STY3093 | CT18, LT2, DT104 | Hypothetical protein |
| STY3277 | CT18 | SPI-8, unknown |
| STY3291-3292 | CT18 | SPI-8, unknown |
| STY3605-3606 | CT18, LT2, DT104 | YigG, YigF |
| STY3617-3619 | CT18, LT2, DT104 | Conserved hypothetical, membrane proteins |
| STY3643-3645 | CT18 | Membrane proteins |
| STY3675 | CT18, LT2 | Phage terminase, ATPase subunit |
| STY3819 | CT18, LT2, DT104 | Possible membrane transport protein |
| STY3922 | CT18 | Probable fimbrial protein |
| STY3948-3950 | CT18 | Hypothetical proteins |
| STY4075 | CT18 | Hypothetical protein |
| STY4208 | CT18 | Putative lipoprotein |
| STY4601-4602 | CT18, LT2 | SopE phage (putative regulator of late gene expression) |
| STY4605-4607 | CT18, LT2 | SopE phage (structural genes) |
| STY4613-4617 | CT18, LT2 | SopE phage (structural genes) |
| STY4620 | CT18, LT2 | SopE phage (NucD2 putative lysozyme) |
| STY4623-4626 | CT18 | SopE phage (structural genes) |
| STY4641-4643 | CT18, LT2 | SopE phage (phage regulatory proteins) |
| STY4706 | CT18 | Conserved hypothetical protein |
| STY4825 | CT18 | Phage polarity suppression protein |
| STY4880 | CT18, LT2, DT104 | YjiW, conserved hypothetical protein |
| STY4922 | CT18 | YafM, conserved hypothetical protein |
| TY2.14 | NO | Hypothetical protein |
a
STY, S. Typhi CT18; STM, S. Typhimurium LT2; SDT, S. Typhimurium DT104; SBG, the strain of S. bongori that has been sequenced; TY, S. Typhi Ty2. AYSL and AYGAL, unannotated features present in the microarray from S. Typhimurium SL1344 and S. Gallinarum, respectively.
b
Indicates when the complete region or gene is present in the sequenced CT18, LT2, and/or DT104 strains.
c
PTS, phosphotransferase system.