TABLE 1.
Characteristics of 34 E. coli isolates shown in chronological ordera
| Strain no., origin | Site of isolation | Date of isolation (day/mo/yr) | PFGE type | RAPD type | Phylogenetic group |
|---|---|---|---|---|---|
| 1, colonized neonate | Rectal swab | 24.03.09 | I | α | A |
| 2, colonized neonate | Rectal swab | 25.03.09 | I | α | A |
| 3, colonized neonate | Rectal swab | 31.03.09 | I | α | A |
| 4, colonized neonate | Rectal swab | 31.03.09 | I | α | A |
| 5, colonized neonate | Rectal swab | 7.04.09 | I | α | A |
| 6, neonate with meningitis | Rectal swab | 7.04.09 | I | α | A |
| 7, colonized neonate | Rectal swab | 7.04.09 | I | α | A |
| 8, colonized neonate | Rectal swab | 7.04.09 | I | α | A |
| 9, colonized neonate | Rectal swab | 7.04.09 | I | α | A |
| 10, colonized neonate | Rectal swab | 7.04.09 | I | α | A |
| 11, control patient 1 | Rectal swab | 7.04.09 | II | ß | D |
| 12, colonized neonate | Rectal swab | 7.04.09 | I | α | A |
| 13, neonate with meningitis | CSF | 12.04.09 | I | α | A |
| 14, neonate with meningitis | Blood culture | 12.04.09 | I | α | A |
| 15, colonized neonate | Rectal swab | 14.04.09 | I | α | A |
| 16, colonized neonate | Rectal swab | 14.04.09 | I | α | A |
| 17, colonized neonate | Rectal swab | 14.04.09 | I | α | A |
| 18, colonized neonate | Rectal swab | 14.04.09 | I | α | A |
| 19, colonized neonate | Rectal swab | 14.04.09 | I | α | A |
| 20, colonized neonate | Rectal swab | 14.04.09 | I | α | A |
| 21, colonized neonate | Rectal swab | 14.04.09 | I | α | A |
| 22, colonized neonate | Rectal swab | 21.04.09 | I | α | A |
| 23, colonized neonate | Rectal swab | 21.04.09 | I | α | A |
| 24, colonized neonate | Rectal swab | 21.04.09 | I | α | A |
| 25, colonized neonate | Rectal swab | 21.04.09 | I | α | A |
| 26, colonized neonate | Rectal swab | 21.04.09 | I | α | A |
| 27, colonized neonate | Rectal swab | 21.04.09 | I | α | A |
| 28, colonized neonate | Rectal swab | 27.04.09 | I | α | A |
| 29, colonized neonate | Rectal swab | 27.04.09 | I | α | A |
| 30, mother's milk 1 | Milk sample | 28.04.09 | I | α | A |
| 31, colonized neonate | Eye | 29.04.09 | I | α | A |
| 32, mother's milk 2 | Milk sample | 11.05.09 | I | α | A |
| 33, control patient 2 | Rectal swab | 13.05.09 | III | γ | B2 |
| 34, control patient 3 | Rectal swab | 13.05.09 | IV | δ | B2 |
All isolates except the control strains (no. 11, 33, and 34) showed identical PFGE and RAPD types and belong to phylogenetic group A, as determined by the triplex PCR method.