TABLE 3.
Primers used in this study
| Name | Sequence or reference | Purpose |
|---|---|---|
| 1F | TGTGTCTCGGCTTACCCTTC | ChIP per1 |
| 1R | GCGGAAAGAGACGGATAACA | ChIP per1; 5′ RACE |
| 1BR | GTGCAATCTACTAGCAACCAAG | 5′ RACE |
| 2F | GCTCTCCAAGTGCCAGTTTC | ChIP per1 |
| 2R | GCCGCACAATATGGATAAGG | ChIP per1 |
| 3F | CGCATCTTGCATTATTTCACC | ChIP per1 |
| 3R | AAACGATTGGGAAACACTCG | ChIP per1; 5′ RACE |
| 4F | GTCGCCAGATCGCTCTATTG | ChIP per1 |
| 4R | TGGGATGAATGTCGAAAACA | ChIP per1; 5′ RACE |
| 5F | GCGGTGGTGTTCCTACTGAT | ChIP; qRT-PCR |
| 5R | GCACGAGGGAGAGACTTTTG | ChIP; qRT-PCR |
| 6F | TGATTTAGACACGGGACTTCG | ChIP per1 |
| 6R | CAAAGAGATTGCCAAATCCA | ChIP per1 |
| 7F | CGTTGTAAGTTTATATGTTGAAGCA | ChIP per1 |
| 7R | TGCGAATGCAAGGCATAATA | ChIP per1 |
| 8F | ATATAATGTTGAGCTCCTTGGTTAGC | ChIP per1 |
| 8R | TGAGCTTGATAAGGCGGTCT | ChIP per1 |
| Put4BF | AAAAAGGCGTTGCAGTATGA | ChIP put4 |
| Put4BR | TTTCTCCGTACTTCTTTTCAACG | ChIP put4 |
| Adh1PF | CTTCCGCGTCTCATTGGT | ChIP adh1 |
| Adh1PR | TTGCTTAAAGAAAAGCGAAGG | ChIP adh1 |
| dhF | 21 | ChIP dh |
| dhR | 21 | ChIP dh |
| Put4F | ACATGATCGCTTGGGTTTTC | qRT-PCR put4 |
| Put4R | TTAGGGATGTTACGCCTTGG | qRT-PCR put4 |
| Adh1F | CGTATTGACTCTATCGAGGCTCTT | qRT-PCR adh1 |
| Adh1R | CTTGGAAAGGTCCAAGACGA | qRT-PCR adh1 |
| RT-PCR1 | 51 | RT-PCR dh |
| RT-PCR2 | 51 | RT-PCR dh |
| ACTF | 51 | RT-PCR act1 |
| ACTR | 51 | RT-PCR act1 |
| ORFT7 | TAATACGACTCACTATAGGGAGAGCGGTGGTGTTCCTACTGAT | Northern per1 |
| ORFT3 | AATTAACCCTCACTAAAGGGAGACCAACACGAAGGGAGAGGTA | Northern per1 |
| US2T7 | TAATACGACTCACTATAGGGAGAGCCCATTCCCATTCAATTTT | Northern per1 |
| US2T3 | AATTAACCCTCACTAAAGGGAGAATGTTTGAGCGCGTGTATGT | Northern per1 |
| US1T7 | TAATACGACTCACTATAGGGAGACTGCTGCAAAACTTTGGTTG | Northern per1 |
| US1T3 | AATTAACCCTCACTAAAGGGAGATTAGTTACCCTATTTGGAAG | Northern per1 |
| RplAT7 | TAATACGACTCACTATAGGGAGAGCTCGTATCTGTGCCAACAA | Northern rpl1002 |
| RplAT3 | AATTAACCCTCACTAAAGGGAGAGTAGCAACCGTCGGGAATAA | Northern rpl1002 |
| RplBT7 | TAATACGACTCACTATAGGGAGATGGTGTTGGATGAATCGGTA | Northern rpl1002 |
| RplBT3 | AATTAACCCTCACTAAAGGGAGACGTGGAAGTAGATGCGGAGT | Northern rpl1002 |
| Adh1T7 | TAATACGACTCACTATAGGGAGATTCAAGGTGACTGGCCTCTT | Northern rpl1002 |
| Adh1T3 | AATTAACCCTCACTAAAGGGAGACAAGGCACGATAGCAAGTGA | Northern adh1 |
| Prw1FT7 | GTGATAACTACTAATACGACTCACTATAGGGAGAATGGC TGTATCAGCTGTTC | Northern adh1 |
| Prw1R | TTAACTTAAATATGCCGTAG | In vitro translation |
| Cha4FT7 | GTGATAACTACTAATACGACTCACTATAGGGAGAATGCAAATGAAACCCCGAC | In vitro translation |
| Cha4R | TTAATATTTTACATTGGGAG | In vitro translation |
| In vitro translation | ||
| Hat1F | ATGAGTGCTG TTGATGAATG | pBS-hat1 |
| Hat1R | TTAGGAAGAAGATTGAGCAAG | pBS-hat1 |
| Mis16F | ATGTCAGAGGAAGTAGTCC | pBS-mis16 |
| Mis16R | TTACTCCAGATCCCTAGGAG | pBS-mis16 |
| Ago1F | GATGTCGTATAAACCAAGCTCAG | pBS-ago1 |
| Ago1R | TTACATATACCACATCTTTGTTTTC | pBS-ago1 |
| P14 | ACCCCCGGGCATGTCTGTCACCCT | pGEX4T1-oca2 |
| P15 | GGACCCGGGATGCTTTGCAGGTGG | pGEX4T1-oca2 |
| Hat1KanF | GAGCTAGAAATCTATATAATAGTAAATATTTTTTAATAATAACAGGTGTAGCACGTGAAAGCGGATCCCCGGGTTAATTAA | hat1Δ |
| Hat1KanR | TAAATTTTGGAAAAAGCAGTTCATTATGAGGAATTGTTTGAATTTTTATAAGGTGCCTTTGAATTCGAGCTCGTTTAAAC | hat1Δ |