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. 2010 Apr 30;192(13):3268–3278. doi: 10.1128/JB.00118-10

TABLE 2.

Plasmids used in this work

Plasmid Relevant characteristics Reference
pBBR1MCS2 Kmr cloning vector replicable in Rhizobium Kovach et al., 1995 (16)
pCR-ctRNAwt 42d pBBR1MCS2 carrying a ctRNA wild type from p42d R. etli This work
pCR-ctRNAwt SymA pBBR1MCS2 carrying a ctRNA wild type from pSymA S. meliloti 1021 This work
pCR-ctRNA-CGCU pBBR1MCS2 carrying a ctRNA with modified loop (from 5′-GCGA to 5′-CGCU) This work
pCR-ctRNAmut2-5 pBBR1MCS2 carrying a ctRNA with nucleotides 2-5 changed in the left arm from CUAC to AAUG This work
pCR-ctRNAmut2-5 CGCU pBBR1MCS2 carrying a ctRNA with both mutations: modified loop (from 5′-GCGA to 5′-CGCU) and nucleotides 2-5 changed in the left arm from CUAC to AAUG This work
pCR-ctRNA-Δ(1-8) pBBR1MCS2 carrying a ctRNA with lack eight of the first nucleotide of the left arm This work
pCR-ctRNADqS pBBR1MCS2 carrying a ctRNA with stem-loop and 3′ end from incα region of S. meliloti pSymA and 5′ end (13 nt) from incα region of R. etli p42d This work
pCR-ctRNA5N pBBR1MCS2 carrying a ctRNA with stem-loop and 3′ end from incα region of R. etli p42d and 5′ end with nonrelated nucleotides This work
pCR-ctRNAart pBBR1MCS2 carrying a ctRNA with stem-loop with nonrelated nucleotides, 3′ end and 5′ end from ctRNA of p42d This work