Table III.

Summary of results for association tests with markers in the chromosome 9q region and cleft lip/palate in the studied populations.

SNP Name	UCSC base position1	Mapping Gene (SNP Location)	Family-Based Analyses (P-values2)
			Individual Populations					Pooled Populations
			USA	Guatemala	Spain	Turkey	China
rs357564	95,289,149	PTCH	0.40	0.19	0.49	0.74	0.50	0.09
rs2236407	95,317,351	PTCH	0.49	0.16	0.40	0.64	1.00	0.52
rs2297088	95,322,539	PTCH	0.66	0.64	0.71	0.64	0.89	0.87
rs10512248	95,339,258	PTCH	0.75	0.16	1.00	0.64	0.58	0.90
rs894673	97,691,825	FOXE1	0.85	0.93	0.48	0.82	0.19	0.58
rs3758249	97,693,695	FOXE1	0.60	0.93	0.43	0.65	0.26	0.71
rs10984103	97,718,830	C9orf156	0.89	0.86	0.27	0.67	0.24	0.52
rs2900463	98,057,012	TBC1D2	0.63	0.52	0.87	0.06	0.18	0.11
rs2808557	98,322,919	GPR51	0.93	0.47	0.78	0.53	0.18	0.62
rs1031111	99,241,353	intergenic	0.66	0.85	0.55	1.00	0.71	0.99
rs1526267	99,669,300	NR4A3	0.49	0.65	0.05	0.12	0.48	0.79
rs1226588	100,420,569	TMEFF1	0.06	0.88	0.74	0.37	0.66	0.25
rs1448576	103,063,232	340511	0.56	0.65	1.00	0.68	0.04	0.13
rs1992917	103,069,198	340511	0.68	0.89	0.86	0.70	0.28	0.84
rs1993434	103,113,863	intergenic	0.92	0.66	0.42	0.84	0.76	0.59
rs2014343	110,938,866	intergenic	0.31	0.01	0.49	0.03	0.28	0.01
rs4979032	111,506,520	intergenic	0.89	0.39	0.74	0.39	0.58	0.50
rs2762475	111,968,071	SUSD1	0.47	0.84	0.49	1.00	0.79	0.89
rs1999263	112,289,228	HSDL2	0.71	0.20	1.00	0.25	0.15	0.97
rs10739367	112,446,633	intergenic	0.97	0.26	0.59	0.67	0.65	0.87
rs1539339	112,673,284	SNX30	0.94	0.83	0.44	1.00	0.09	0.25
rs818714	113,262,855	C9orf43	0.12	0.53	0.39	0.64	0.86	0.16
rs1008138	113,889,024	ZNF618	0.46	0.14	0.12	0.80	0.63	0.25
rs942519	114,248,587	DFNB31	0.80	0.18	0.45	0.47	0.53	0.52
rs2992147	114,928,868	TNC	0.33	0.78	0.85	0.37	0.88	0.37
rs971037	115,746,096	C9orf27	0.81	0.78	0.52	0.09	0.56	0.56
rs1888636	116,018,888	PAPPA	0.06	0.61	0.43	0.81	0.89	0.39
rs1418495	118,170,345	intergenic	0.04	0.91	0.42	0.68	0.53	0.27
rs1335256	118,406,583	intergenic	0.69	0.63	0.71	0.82	0.39	0.65
rs7859743	120,236,145	intergenic	0.75	0.18	0.04	0.37	0.79	0.19
rs2300934	120,888,517	intergenic	0.52	0.04	0.89	0.39	0.04	0.91
rs306796	121,206,889	STOM	0.04	0.004	0.26	0.41	0.06	0.002
rs10739600	121,703,427	TTLL11	0.92	0.93	0.49	0.82	0.09	0.82
rs7853089	122,012,540	C9orf18	0.44	0.45	0.87	0.22	0.81	0.73
rs1928623	122,388,563	OR1N2	0.71	0.17	0.41	0.25	0.16	0.06
rs2251495	122,722,241	MNAB	0.18	0.92	1.00	0.32	0.89	0.73
rs2808416	123,199,713	CRB2	0.51	0.25	0.21	0.83	0.74	0.55
rs1928482	123,512,002	DENND1A	0.03	0.41	0.39	0.24	0.65	0.24
rs2274782	124,163,628	intergenic	0.32	0.44	0.39	0.13	0.28	0.95
rs10739650	124,403,330	NR6A1	0.21	0.15	0.56	0.20	0.37	0.94
rs646527	124,756,786	GOLGA1	0.67	0.40	0.95	0.32	0.22	0.78
rs7853181	125,302,578	MAPKAP1	0.56	0.32	0.49	0.58	0.69	0.95
rs10760403	125,688,049	PBX3	0.52	0.90	0.65	0.41	0.54	0.90
rs10987185	126,021,675	intergenic	0.42	0.42	0.71	0.81	0.34	0.64
rs887659	126,263,863	C9orf28	0.85	0.63	0.83	0.49	0.47	0.82
rs3850585	126,515,826	LMX1B	0.95	0.73	0.21	0.62	0.79	0.64
rs1890546	127,031,695	intergenic	0.47	0.22	0.20	0.43	0.22	0.64
rs7869023	127,281,232	RPL12	0.58	0.65	0.05	0.65	0.17	0.09
rs913989	127,612,542	SH2D3C	0.52	0.22	0.20	0.67	0.41	0.68
rs10819354	127,933,044	SLC25	0.27	0.37	0.13	0.49	0.05	0.87

¹According to the UCSC Genome Browser March 2006 Assembly.

²Family-Based Association Test.