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. Author manuscript; available in PMC: 2010 Jul 7.
Published in final edited form as: Am J Med Genet A. 2010 Jul;152A(7):1701–1710. doi: 10.1002/ajmg.a.33482

Table V.

Results of haplotype transmission analysis in families with cleft lip with or without cleft palate by population.

Marker Haplotype Genes in Haplotype Population HBAT P-value2
rs1928623-rs2251495-rs2808416 Intergenic-MNAB (∼1Mb of STOM)- CRB2 US 0.02
rs1888636-rs1418495-rs1335256-rs7859473 PAPPA-intergenic-intergenic-CDK5RAP2 US 0.02
rs7869023-rs913989 ZNF79-SH2D3C Spain 0.03
rs1928623-rs2251495-rs2808416-rs1928482 Intergenic-MNAB (∼1Mb of STOM)- CRB2-KIAA1608 Turkey 0.02
rs2014343-rs4979032 Intergenic-GNG10 Guatemala 0.04
rs357654-rs2236407-rs2297088 PTCH-PTCH-PTCH Guatemala 0.03
rs357654-rs2236407-rs2297088-rs10512248 PTCH-PTCH-PTCH-PTCH Guatemala 0.02
rs2300934-rs306796 C5-STOM Guatemala 0.03
rs306796-rs10739600 STOM-TTLL11 (∼500kb of STOM) Guatemala 0.03
rs306796-rs10739600-rs7853089-rs1928623 STOM-TTLL11 (∼500kb of STOM)-C9orf18 (∼800kb of STOM) Guatemala 0.02
rs2300934-rs306796 C5-STOM China 0.04
rs306796-rs10739600-rs7853089-rs1928623 STOM-TTLL11 (∼500kb of STOM)-C9orf18 (∼800kb of STOM) China 0.04
1

Comprises analyses of US, Spain, and Turkey families pooled together.

2

Transmission distortion significant when p<0.05.