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. Author manuscript; available in PMC: 2010 Jul 7.
Published in final edited form as: Am J Med Genet A. 2010 Jul;152A(7):1701–1710. doi: 10.1002/ajmg.a.33482

Table VI.

Results of haplotype transmission analysis according to cleft subgroup by population.

Marker Haplotype Genes in Haplotype Cleft Group Population HBAT P-value2
rs357654-rs2236407 PTCH-PTCH CLO + CLCLP1 Guatemala 0.01
rs10512248-rs894673 PTCH-FOXE1 CLO + CLCLP Guatemala 0.01
rs2297088-rs10512248-rs894673 PTCH-PTCH-FOXE1 CLO + CLCLP Guatemala 0.01
rs2236407-rs2297088-rs10512248-rs894673 PTCH-PTCH-PTCH-FOXE1 CLO + CLCLP Guatemala 0.01
rs10512248-rs894673 PTCH-FOXE1 CLO + CLCLP China 0.03
rs10512248-rs894673-rs3758249 PTCH-FOXE1-FOXE1 CLO + CLCLP China 0.03
rs10512248-rs894673-rs3758249-rs10984103 PTCH-FOXE1-FOXE1-C9orf156 CLO + CLCLP China 0.03
1

CLO + CLCLP, families where all affecteds have cleft lip only plus families where at least one affected has cleft lip only and one affected has cleft lip and palate. Excludes any family where an affected has cleft palate only.

2

Transmission distortion significant when p<0.05.