Table 3.
The maximum number of peptides identified by a single search engine at FDR < 1% compared with
| ID | Threshold | Maximum Peptides identified by single search engine |
Maximum search engine |
Combined search |
Percent improvement |
|---|---|---|---|---|---|
| PAe000066 | 1% | 5405 | Omssa | 5794 | 7.2 |
| PAe000077 | 1% | 2636 | Omssa | 3016 | 14.4 |
| PAe000093 | 1% | 5924 | Omssa | 6914 | 16.7 |
| PAe000098 | 1% | 184 | Mascot | 271 | 47.3 |
| PAe000138 | 1% | 1915 | Omssa | 2628 | 37.2 |
| PAe000146 | 1% | 18710 | Omssa | 20776 | 11.0 |
| PAe000157 | 1% | 648 | Omssa | 866 | 33.6 |
| PAe000158 | 1% | 11503 | Omssa | 17091 | 48.6 |
| PAe000160 | 1% | 7687 | Tandem | 11987 | 55.9 |
| PAe000162 | 1% | 1638 | Omssa | 2757 | 68.3 |
| PAe000165 | 1% | 22151 | Omssa | 27904 | 26.0 |
| PAe000166 | 1% | 7091 | Tandem | 9007 | 27.0 |
| PAe000167 | 1% | 1194 | Tandem | 1939 | 62.4 |
| PAe000292 | 1% | 570 | Omssa | 822 | 44.2 |
|
Mean
improvement |
35.7 | ||||