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. 2010 May 6;153(3):1175–1187. doi: 10.1104/pp.110.156430

Table I. Gene identification from G. intraradices.

Gene Name CDS Length Closest Homologa Domains, Families, or Functional Sitesb
bp
Nitrate transporter (GiNT) 990c BAG70346 (Porphyra yezoensis), identity = 39% Major facilitator superfamily
Glutamine synthetase 1 (GiGS1) 1,065d AAY62524 (Glomus intraradices), identity = 99% GLNA_1, Gln synthetase signature 1; GLNA_ATP, Gln synthetase putative ATP-binding region signature
Glutamine synthetase 2 (GiGS2) 1,065d AAR11485 (Glomus mosseae), identity = 88% GLNA_1, Gln synthetase signature 1; GLNA_ATP, Gln synthetase putative ATP-binding region signature
Glutamate synthase (GiGluS) 759c EED14920 (Talaromyces stipitatus), identity = 68% FAD-dependent pyridine nucleotide-disulfide oxidoreductase
Carbamoyl-phosphate synthase glutamine chain (GiCPS) 990c XP961982 (Neurospora crassa), identity = 55% GATASE_TYPE_1, Gln amidotransferase type 1 domain profile
Argininosuccinate synthase (GiASS) 1,239d AAW43079 (Cryptococcus neoformans), identity = 71% ARGININOSUCCIN_SYN_1, argininosuccinate synthase signature 1; ARGININOSUCCIN_SYN_2, argininosuccinate synthase signature 2.
Arginosuccinate lyase (GiAL) 849c XP002172712 (Schizosaccharomyces japonicus), identity = 66% FUMARATE_LYASES, fumarate lyase signature
Arginase (GiCAR1) 945d XP001875445 (Laccaria bicolor), identity = 63% ARGINASE_2, arginase family profile; ARGINASE_1, arginase family signature
Ornithine aminotransferase (GiOAT1) 1,329d XP002171771 (Schizosaccharomyces japonicus), identity = 69% AA_TRANSFER_CLASS_3, aminotransferase class III pyridoxal-phosphate attachment site
Ornithine decarboxylase (GiODC) 1,335d CAB61758 (Mucor circinelloides), identity = 57% ODR_DC_2_1, Orn/diaminopimelate/Arg decarboxylase family 2 pyridoxal-phosphate attachment site
Urease (GiURE) 2,499d XP964986 (Neurospora crassa), identity = 66% UREASE_3, urease domain profile; UREASE_2, urease active site
a

BLAST of the amino acid sequence against the National Center for Biotechnology Information protein database.

b

Based on the databases http://www.expasy.ch/prosite and http://www.ebi.ac.

c

Partial CDS.

d

Full-length CDS.