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. 2010 Jul 8;6(7):e1000844. doi: 10.1371/journal.pcbi.1000844

Table 2. Slope coefficients and R2 values for the comparison of one gap distances calculated for SINA-aligned sequences extracted from different regions within the 16S rRNA gene sequence to one gap distances calculated using sequences aligned by different methods.

Region Statistic RDP greengenes MUSCLE Needleman
V19 Slope 1.06 1.17 1.04 0.93
R2 0.97 0.77 0.98 0.99
V12 Slope 1.13 1.25 1.11 0.93
R2 0.80 0.52 0.77 0.91
V13 Slope 1.08 1.20 1.07 0.93
R2 0.88 0.62 0.92 0.93
V14 Slope 1.06 1.16 1.05 0.94
R2 0.94 0.74 0.96 0.97
V2 Slope 1.04 1.21 1.16 0.97
R2 0.94 0.67 0.64 0.95
V23 Slope 1.04 1.18 1.09 0.95
R2 0.96 0.74 0.92 0.96
V3 Slope 1.00 1.11 2.07 1.02
R2 0.91 0.67 0.14 0.96
V35 Slope 1.01 1.12 1.04 0.95
R2 0.98 0.83 0.97 0.98
V4 Slope 1.00 1.09 1.08 0.98
R2 0.99 0.77 0.87 0.98
V6 Slope 1.09 1.42 3.04 0.98
R2 0.66 0.14 0.30 0.97
V69 Slope 1.07 1.21 1.10 0.94
R2 0.92 0.70 0.91 0.97
V89 Slope 1.05 1.18 1.12 0.96
R2 0.94 0.78 0.86 0.98
V9 Slope 1.08 1.19 1.58 0.96
R2 0.80 0.67 0.36 0.96