Table 2. Slope coefficients and R2 values for the comparison of one gap distances calculated for SINA-aligned sequences extracted from different regions within the 16S rRNA gene sequence to one gap distances calculated using sequences aligned by different methods.
Region | Statistic | RDP | greengenes | MUSCLE | Needleman |
V19 | Slope | 1.06 | 1.17 | 1.04 | 0.93 |
R2 | 0.97 | 0.77 | 0.98 | 0.99 | |
V12 | Slope | 1.13 | 1.25 | 1.11 | 0.93 |
R2 | 0.80 | 0.52 | 0.77 | 0.91 | |
V13 | Slope | 1.08 | 1.20 | 1.07 | 0.93 |
R2 | 0.88 | 0.62 | 0.92 | 0.93 | |
V14 | Slope | 1.06 | 1.16 | 1.05 | 0.94 |
R2 | 0.94 | 0.74 | 0.96 | 0.97 | |
V2 | Slope | 1.04 | 1.21 | 1.16 | 0.97 |
R2 | 0.94 | 0.67 | 0.64 | 0.95 | |
V23 | Slope | 1.04 | 1.18 | 1.09 | 0.95 |
R2 | 0.96 | 0.74 | 0.92 | 0.96 | |
V3 | Slope | 1.00 | 1.11 | 2.07 | 1.02 |
R2 | 0.91 | 0.67 | 0.14 | 0.96 | |
V35 | Slope | 1.01 | 1.12 | 1.04 | 0.95 |
R2 | 0.98 | 0.83 | 0.97 | 0.98 | |
V4 | Slope | 1.00 | 1.09 | 1.08 | 0.98 |
R2 | 0.99 | 0.77 | 0.87 | 0.98 | |
V6 | Slope | 1.09 | 1.42 | 3.04 | 0.98 |
R2 | 0.66 | 0.14 | 0.30 | 0.97 | |
V69 | Slope | 1.07 | 1.21 | 1.10 | 0.94 |
R2 | 0.92 | 0.70 | 0.91 | 0.97 | |
V89 | Slope | 1.05 | 1.18 | 1.12 | 0.96 |
R2 | 0.94 | 0.78 | 0.86 | 0.98 | |
V9 | Slope | 1.08 | 1.19 | 1.58 | 0.96 |
R2 | 0.80 | 0.67 | 0.36 | 0.96 |