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. Author manuscript; available in PMC: 2010 Jul 8.
Published in final edited form as: Mol Cell. 2007 Oct 26;28(2):337–350. doi: 10.1016/j.molcel.2007.09.027

Figure 7. Predicted DNA and RNA motifs for the human gene clustering partition.

Figure 7

FIRE was applied to a clustering partition of 17,390 human genes, clustered based on tissue expression data (Su et al., 2004). The format of this figure is identical to the format of Figure 3. Due to space limitations, only a selection of the predicted motifs is presented. The complete figure is given in Figure S11. Motif names are reported based on the closest known motif in JASPAR or TRANSFAC, with CompareACE score > 0.8. The miRNAs whose 5′ extremity matches 3′UTR elements with high specificity are also reported (see Supplementary Methods).