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. 2010 Jun 14;107(26):11799–11804. doi: 10.1073/pnas.0914457107

Table 1.

Expectation values for 〈εtot〉 and the ratios Inline graphic and Inline graphic obtained from packing density and pathway analyses*

Wild type M51L M51K M51A M51C
Inline graphic (Experiment) 1.0 0.68 0.49 0.13
εtot〉 × 103 (Pathway analysis) 0.90 ± 0.03 0.47 ± 0.03 0.61 ± 0.02 0.65 ± 0.02 0.73 ± 0.02
Inline graphic (Pathway analysis) 1.0 0.36 ± 0.04 0.52 ± 0.04 0.57 ± 0.04 0.76 ± 0.05
εtot × 103 (Packing density) 0.70 ± 0.03 0.42 ± 0.04 0.51 ± 0.03 0.62 ± 0.05 1.03 ± 0.05
Inline graphic (Packing density) 1.0 0.56 ± 0.09 0.76 ± 0.07 0.89 ± 0.15 2.29 ± 0.26
Phb 0.53 0.15 0.19 0.18 0.16
τ (ns-1) 0.40 0.57 0.60 0.65 0.68

*The uncertainties account for the sampling errors of the computational protocol (see SI Text). Experimental rates kET were obtained from k3 (at 30 °C) in table 3 of ref. 15 (M51C was not reported). Phb is the unit-normalized likelihood that a water molecule is simultaneously hydrogen bonded to both the MADH Ser β 56 O and amicyanin His 95 HE2 atoms during our simulations. The turnover τ of the bridging water molecule is defined as the number of different water molecules that participate in pathway A1 divided by the length of the simulation in nanoseconds.