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. Author manuscript; available in PMC: 2011 Jul 8.
Published in final edited form as: J Phys Chem B. 2010 Jul 8;114(26):8701–8712. doi: 10.1021/jp9109699

FIGURE 6.

FIGURE 6

The RMSDs of the selected active site region: (A) Time dependence of the RMSD from the initial crystal structure calculated for three different regions of the glmS riboswitch active site as depicted in (B) for the green line, (C) for the red line and (D) for the black line. The specific atoms used for the RMSD calculation are shown in stick representation. The lowest RMSD of ~0.5 Å is characteristic for structures with no geometrical changes compared to the starting X-ray geometries. RMSD values above ~0.5 Å indicate changes from the starting crystal structure (for detailed description see Supplementary Materials).