Skip to main content
. 2010 May 20;49(27):5817–5827. doi: 10.1021/bi100332r

Table 2. Chemical Shifts of H2′ Protons in Loop vs Stema.

sequence avg measured δ of H2′ in WC pair not terminal or 5′ of AG or GA loop measured δ of H2′ 5′ of AG or GA loop NUCHEMICS prediction of δ of H2′ 5′ of AG or GA loop
5′-GACGAGCGUCA 4.41 ± 0.13 3.97 4.28 ± 0.14
ACUGCGAGCAG-5′
       
5′-GGCAGGCCb 4.40 ± 0.14 4.06 4.64
CCGGACGG-3′
       
5′-GACUAGAGUCA 4.41 ± 0.18 4.16 4.57 ± 0.02
ACUGAGAUCAG-5′
       
5′-GACAAGUGUCA 4.44 ± 0.14 4.15 4.63 ± 0.05
ACUGUGAACAG-5′
       
5′-GCGGACGCc 4.36 ± 0.11 3.74 4.44
CGCAGGCG-5′
       
5′-GGUAGGCCA 4.43 ± 0.15 3.78 4.02 ± 0.10
ACCGGAUGG-5′
       
5′-GGiCGAiGCCAd 4.37 ± 0.11 4.15 N/A
ACCiGAGiCGG-5′
       
avg 4.41 ± 0.14 4.00 ± 0.17 4.43 ± 0.22
a

Comparison of H2′ proton chemical shifts (δ in ppm) in residues 5′ of tandem AG or GA imino pairs with H2′ shifts of all other nonterminal Watson−Crick (WC) paired residues and with NUCHEMICS prediction of chemical shift.

b

Reference (23).

c

Reference (22).

d

Reference (51).