Table 4.
Shows a summary of the output count after 4 program test runs
| Number of SNPs ... | Number of entries found in database for SNPs meeting input criteria ++ | |||||||
|---|---|---|---|---|---|---|---|---|
| # | meeting input criteria$$ | derived from WGAS meeting criteria | found in database with score = > 20 | Genes | Proteins | Pathways | Gene Ontology | Homologous Genes(with Homo sapiens) |
| 1 | 165 | 165 | 1 | 52 | 23 | 43 | 259 | 47 |
| 2 | 7 | 7 | 1 | 7 | 4 | 19 | 29 | 5 |
| 3 | 15 | 1 | 8 | 15 | 9 | 29 | 114 | 13 |
| 4 | 11 | 0 | 11 | 6 | 10 | 21 | 126 | 6 |
# = test run number$$ criteria determines the number of SNPs input into program
1: all 165 significant SNPs
2: significant SNPs with score greater than 7
3: SNPs with score greater than 11 within 10,000 base pairs from significant SNPs
4: SNP with score greater than 24 located on genes within 10,000 base pairs from significant SNPs.
++ Example: For run 3, the highest scoring SNPs within 10,000 base pairs from 165 significant SNPs were found in database; 15 of the found SNPs met the criteria of score > 11; 1 out of the 15 SNPs found was a WGAS derived SNP; 8 SNPs from the 15 have a score = > 20. 15 SNPs are located on 15 genes with 9 protein products. The genes are involved in 29 pathways, have 114 Gene Ontology terms, and are homologous with 13 human genes.