Table 1. Gene set enrichment analysis results.
Gene Set Package | Statistic Description | 24H FSK | 24H CTL | 48H FSK | 48H CTL | 72H FSK | 72H CTL |
Mammalian | Up/Total | 407/783 | 376/783 | 512/783 | 271/783 | 146/783 | 636/783 |
p<0.05 | 72 | 26 | 165 | 29 | 37 | 210 | |
q<0.25 | 66 | 0 | 198 | 5 | 41 | 331 | |
Conservation | Up/Total | 323/359 | 36/359 | 256/359 | 103/359 | 219/359 | 140/359 |
p<0.05 | 176 | 2 | 127 | 22 | 95 | 31 | |
q<0.25 | 230 | 0 | 162 | 53 | 128 | 45 | |
Curated | Up/Total | 691/1,197 | 507/1,197 | 778/1,197 | 419/1,197 | 695/1,197 | 502/1,197 |
p<0.05 | 240 | 136 | 364 | 94 | 231 | 216 | |
q<0.25 | 323 | 152 | 495 | 114 | 285 | 346 |
The number of mammalian miRNA/transcription factor motif based (“Mammalian”), chicken/frog conservation transcription factor motif based gene sets (“Conservation”), and curated gene sets from the BROAD Institute (“Curated”) meeting the criteria p<0.05 and q (false discovery rate) <0.25 for forskolin (FSK) and control (CTL) samples after 24, 48, or 72 hours in culture.