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. 2010 Jul 9;5(7):e11502. doi: 10.1371/journal.pone.0011502

Table 1. Gene set enrichment analysis results.

Gene Set Package Statistic Description 24H FSK 24H CTL 48H FSK 48H CTL 72H FSK 72H CTL
Mammalian Up/Total 407/783 376/783 512/783 271/783 146/783 636/783
p<0.05 72 26 165 29 37 210
q<0.25 66 0 198 5 41 331
Conservation Up/Total 323/359 36/359 256/359 103/359 219/359 140/359
p<0.05 176 2 127 22 95 31
q<0.25 230 0 162 53 128 45
Curated Up/Total 691/1,197 507/1,197 778/1,197 419/1,197 695/1,197 502/1,197
p<0.05 240 136 364 94 231 216
q<0.25 323 152 495 114 285 346

The number of mammalian miRNA/transcription factor motif based (“Mammalian”), chicken/frog conservation transcription factor motif based gene sets (“Conservation”), and curated gene sets from the BROAD Institute (“Curated”) meeting the criteria p<0.05 and q (false discovery rate) <0.25 for forskolin (FSK) and control (CTL) samples after 24, 48, or 72 hours in culture.