Skip to main content
. 2010 Jul 9;5(7):e11502. doi: 10.1371/journal.pone.0011502

Table 4. Curated gene set enrichment analysis results.

Gene Set Enriched at 24H 24H P-Value 24H FDR Enriched at 48H 48H P-Value 48H FDR Enriched at 72H 72H P-Value 72H FDR
SERUM_FIBROBLAST_CELLCYCLE Forskolin 0.012 0.053 Forskolin <0.001 <0.001 Forskolin <0.001 <0.001
HSA04110_CELL_CYCLE Forskolin 0.002 0.014 Forskolin <0.001 <0.001 Forskolin <0.001 <0.001
CELL_CYCLE Forskolin <0.001 0.004 Forskolin <0.001 <0.001 Forskolin <0.001 <0.001
CELL_CYCLE_KEGG Forskolin <0.001 0.004 Forskolin <0.001 <0.001 Forskolin <0.001 <0.001
GOLDRATH_CELLCYCLE Forskolin 0.018 0.061 Forskolin <0.001 <0.001 Forskolin <0.001 0.002
CELL_CYCLE_CHECKPOINT Forskolin <0.001 0.003 Forskolin 0.002 0.008 Forskolin <0.001 0.003
G1_TO_S_CELL_CYCLE_REACTOME Forskolin <0.001 0.002 Forskolin 0.006 0.023 Forskolin 0.013 0.054
BRENTANI_CELL_CYCLE Forskolin <0.001 0.004 Forskolin <0.001 <0.001 Forskolin 0.018 0.059
HSA04330_NOTCH_SIGNALING_PATHWAY Forskolin 0.577 0.679 Forskolin 0.037 0.084 Forskolin 0.896 0.949
STEMCELL_COMMON_UP Forskolin <0.001 0.001 Forskolin <0.001 <0.001 Forskolin <0.001 <0.001
STEMCELL_COMMON_DN Control 0.107 0.294 Control <0.001 0.022 Control <0.001 0.008
REN_E2F1_TARGETS Forskolin 0.141 0.278 Forskolin 0.002 0.007 Forskolin <0.001 0.001
VERNELL_PRB_CLSTR1 Forskolin 0.006 0.054 Forskolin <0.001 <0.001 Forskolin <0.001 <0.001
BRENTANI_DEATH Forskolin <0.001 0.004 Forskolin 0.039 0.094 Forskolin 0.853 0.914
HSA04210_APOPTOSIS Forskolin <0.001 0.017 Forskolin 0.004 0.012 Forskolin 0.016 0.049
APOPTOSIS Forskolin 0.002 0.010 Forskolin 0.004 0.044 Control 0.308 0.454
APOPTOSIS_GENMAPP Forskolin 0.016 0.052 Forskolin 0.002 0.019 Forskolin 0.146 0.256
PASSERINI_APOPTOSIS Forskolin 0.085 0.207 Forskolin 0.015 0.034 Control 0.045 0.132

Shown are the curated gene set enrichment analysis results for selected gene sets of interest at 24, 48, and 72 hours. The gene sets shown here were downloaded from the BROAD Institute website and represent empirically defined sets of genes. References for each gene set are provided in the text. Italicized are those gene sets with p-value <0.05 and false discovery rate (FDR) <0.25, which are taken as significant. Gene sets are directly as they appear in the Molecular Signatures Database on the Broad Institute website.