Table 4. Curated gene set enrichment analysis results.
Gene Set | Enriched at 24H | 24H P-Value | 24H FDR | Enriched at 48H | 48H P-Value | 48H FDR | Enriched at 72H | 72H P-Value | 72H FDR |
SERUM_FIBROBLAST_CELLCYCLE | Forskolin | 0.012 | 0.053 | Forskolin | <0.001 | <0.001 | Forskolin | <0.001 | <0.001 |
HSA04110_CELL_CYCLE | Forskolin | 0.002 | 0.014 | Forskolin | <0.001 | <0.001 | Forskolin | <0.001 | <0.001 |
CELL_CYCLE | Forskolin | <0.001 | 0.004 | Forskolin | <0.001 | <0.001 | Forskolin | <0.001 | <0.001 |
CELL_CYCLE_KEGG | Forskolin | <0.001 | 0.004 | Forskolin | <0.001 | <0.001 | Forskolin | <0.001 | <0.001 |
GOLDRATH_CELLCYCLE | Forskolin | 0.018 | 0.061 | Forskolin | <0.001 | <0.001 | Forskolin | <0.001 | 0.002 |
CELL_CYCLE_CHECKPOINT | Forskolin | <0.001 | 0.003 | Forskolin | 0.002 | 0.008 | Forskolin | <0.001 | 0.003 |
G1_TO_S_CELL_CYCLE_REACTOME | Forskolin | <0.001 | 0.002 | Forskolin | 0.006 | 0.023 | Forskolin | 0.013 | 0.054 |
BRENTANI_CELL_CYCLE | Forskolin | <0.001 | 0.004 | Forskolin | <0.001 | <0.001 | Forskolin | 0.018 | 0.059 |
HSA04330_NOTCH_SIGNALING_PATHWAY | Forskolin | 0.577 | 0.679 | Forskolin | 0.037 | 0.084 | Forskolin | 0.896 | 0.949 |
STEMCELL_COMMON_UP | Forskolin | <0.001 | 0.001 | Forskolin | <0.001 | <0.001 | Forskolin | <0.001 | <0.001 |
STEMCELL_COMMON_DN | Control | 0.107 | 0.294 | Control | <0.001 | 0.022 | Control | <0.001 | 0.008 |
REN_E2F1_TARGETS | Forskolin | 0.141 | 0.278 | Forskolin | 0.002 | 0.007 | Forskolin | <0.001 | 0.001 |
VERNELL_PRB_CLSTR1 | Forskolin | 0.006 | 0.054 | Forskolin | <0.001 | <0.001 | Forskolin | <0.001 | <0.001 |
BRENTANI_DEATH | Forskolin | <0.001 | 0.004 | Forskolin | 0.039 | 0.094 | Forskolin | 0.853 | 0.914 |
HSA04210_APOPTOSIS | Forskolin | <0.001 | 0.017 | Forskolin | 0.004 | 0.012 | Forskolin | 0.016 | 0.049 |
APOPTOSIS | Forskolin | 0.002 | 0.010 | Forskolin | 0.004 | 0.044 | Control | 0.308 | 0.454 |
APOPTOSIS_GENMAPP | Forskolin | 0.016 | 0.052 | Forskolin | 0.002 | 0.019 | Forskolin | 0.146 | 0.256 |
PASSERINI_APOPTOSIS | Forskolin | 0.085 | 0.207 | Forskolin | 0.015 | 0.034 | Control | 0.045 | 0.132 |
Shown are the curated gene set enrichment analysis results for selected gene sets of interest at 24, 48, and 72 hours. The gene sets shown here were downloaded from the BROAD Institute website and represent empirically defined sets of genes. References for each gene set are provided in the text. Italicized are those gene sets with p-value <0.05 and false discovery rate (FDR) <0.25, which are taken as significant. Gene sets are directly as they appear in the Molecular Signatures Database on the Broad Institute website.