Table 2.
Species | strain | NCBI RefSeq | locus | total | bacterial1 | archaeal1 | ACS/CODH2 |
---|---|---|---|---|---|---|---|
Archaeoglobus fulgidus | DSM4304 | NC_000917 | AF1100, 1849, 2397 | 3 | 1 | 2 | 2 |
Desulfovibrio vulgaris | Hildenborough | NC_002937 | DVU0298 | 1 | 1 | 0 | 0 |
Desulfovibrio vulgaris | DP4 | NC_008751 | Dvul_1133 | 1 | 1 | 0 | 0 |
Desulfovibrio vulgaris | Miyazaki F | NC_011769 | DvMF_2233 | 1 | 1 | 0 | 0 |
Desulfovibrio desulfuricans | G20 | NC_007519 | Dde_3028 | 1 | 1 | 0 | 0 |
Desulfovibrio desulfuricans | ATCC27774 | NC_011883 | Ddes_0382 | 1 | 1 | 0 | 0 |
Desulfovibrio salexigens | DSM2638 | NZ_ACCN | DesalDRAFT | 1 | 1 | 0 | 0 |
Desulfotomaculum reducens | MI-1 | NC_009253 | Dred_0652 | 1 | 1 | 0 | 0 |
3 Desulforudis audaxviator | MP104C | NC_010424 | Daud_0870, 0105 | 2 | 1 | 1 | 2 |
Desulfococcus oleovorans | Hxd3 | NC_009943 | Dole_1461, 3185 | 2 | 2 | 0 | 1 |
Syntrophobacter fumaroxidans | MPOB | NC_008554 | Sfum_2566, 2875 | 2 | 2 | 0 | 1 |
Desulfatibacillum alkenivorans | AK-01 | NC_011768 | Dalk_0680, 2379 | 2 | 2 | 0 | 1 |
Thermodesulfovibrio yellowstonii | DSM11347 | NC_011269 | THEYE_A1470 | 1 | 1 | 0 | 1 |
Desulfobacterium autotrophicum | HRM2 | 4CP001087 | HRM2_16670, 41010, 43430 | 3 | 3 | 0 | 1 |
| |||||||
Caldivirga maquilingensis | IC-167 | NC_009954 | 0 | ||||
Desulfovibrio piger | ATCC29098 | NZ_ABXU | 0 | ||||
Desulfotalea psychrophila | LSv54 | NC_006138 | 0 |
1 Number of CO-dehydrogenase genes present in the genome that are homologous to the CO-dehydrogenases commonly found in bacterial ACS/CODH or in archaeal ACS/CODH.
2 Number of CO-dehydrogenase genes present in a gene context that suggest it is part of acetyl-CoA synthase/CO-dehydrogenase complex.
3 It is predicted that candidatus Desulforudis audaxviator is a sulphate reducer based upon genome sequence [73].
4 Genbank accession number for Desulfobacterium autotrophicum.