TABLE 3.
Putative open reading frames present in pLM33 and their putative functions
CDSa | % GC content | No. of amino acids | BLAST-based putative function (E value) |
---|---|---|---|
pLM33_0001 | 36.35 | 408 | Transposase element IS712A, Listeria grayi DSM 20601 (0; 100% identity) |
pLM33_0002 | 37.02 | 252 | Putative transposase helper protein for IS712A, Lactococcus lactis subsp. cremoris MG1363 (3E−79; 98.0159% identity) |
pLM33_0003 | 35.49 | 200 | Transposase, Listeria monocytogenes FSL J1-194 (1E−111; 100% identity) |
pLM33_0004 | 41.67 | 251 | Hypothetical protein |
pLM33_0005 | 38.79 | 54 | Hypothetical protein |
pLM33_0006 | 42.59 | 586 | Plasmid replication protein RepR, Listeria grayi DSM 20601 (0; 94.0199% identity) |
pLM33_0007 | 28.93 | 52 | Hypothetical protein |
pLM33_0008 | 30.09 | 348 | Rep63B, Listeria monocytogenes FSL J1-194 (0; 100% identity) |
pLM33_0009 | 29.63 | 98 | Hypothetical protein |
pLM33_0010 | 42.15 | 426 | Possible DNA-directed DNA polymerase, Listeria grayi DSM 20601 (0; 100% identity) |
pLM33_0011 | 41.16 | 114 | Hypothetical protein |
pLM33_0012 | 32.55 | 254 | Hypothetical protein |
pLM33_0013 | 35.11 | 449 | Putative transposase for insertion sequence element IS3 family protein, Listeria monocytogenes FSL J (0; 100% identity) |
pLM33_0014 | 40.05 | 704 | ATP-dependent Clp protease, ATP-binding subunit ClpL, Listeria monocytogenes FSL J1-194 (0; 100% identity) |
pLM33_0015 | 34.6 | 78 | Cro/CI family phage transcriptional regulator, Listeria monocytogenes FSL J1-194 (1E−37; 100% identity) |
pLM33_0016 | 36.92 | 92 | Hypothetical protein |
pLM33_0017 | 38.42 | 202 | Putative resolvase, N-terminal domain protein, Listeria monocytogenes FSL J1-194 (1E−104; 93.9698% identity) |
pLM33_0018 | 29.82 | 246 | Hypothetical protein |
pLM33_0019 | 29.32 | 588 | Hypothetical protein |
pLM33_0020 | 36.3 | 44 | Hypothetical protein |
pLM33_0021 | 40.78 | 84 | Hypothetical protein |
pLM33_0022 | 38.05 | 289 | Integrase catalytic region, Listeria monocytogenes FSL J1-194 (1E−170; 100% identity) |
pLM33_0023 | 33.61 | 238 | Hypothetical protein |
pLM33_0024 | 33.75 | 240 | CRISPR-associated Cas5 family protein, Listeria monocytogenes FSL J1-194 (1E−128; 100% identity) |
pLM33_0025 | 34.74 | 141 | Hypothetical protein |
pLM33_0026 | 32.89 | 75 | Hypothetical protein |
pLM33_0027 | 35.84 | 92 | Hypothetical protein |
pLM33_0028 | 38.62 | 125 | Hypothetical protein |
pLM33_0029 | 39.97 | 220 | Hypothetical protein |
pLM33_0030 | 37.92 | 108 | Hypothetical protein |
pLM33_0031 | 34.6 | 78 | Hypothetical protein |
pLM33_0032 | 41.15 | 80 | Putative PemI-like inhibitor, Listeria monocytogenes FSL J1-194 (5E−39; 100% identity) |
pLM33_0033 | 41.23 | 113 | Putative PemK-like protein, Listeria monocytogenes FSL J1-194 (8E−47; 100% identity) |
pLM33_0034 | 39.98 | 711 | Cadmium resistance protein B, Listeria monocytogenes FSL J1-194 (0; 100% identity) |
pLM33_0035 | 35.28 | 119 | Putative cadmium efflux system accessory protein, Bacillus sp. strain NRRL B-14911 (4E−29; 92.562% identity) |
pLM33_0036 | 38.02 | 184 | Resolvase, Listeria monocytogenes FSL J1-194 (1E−102; 100% identity) |
pLM33_0037 | 36.83 | 971 | Transposase, Listeria monocytogenes FSL J1-194 (0; 100% identity) |
Database coding sequence designation.