TABLE 2.
Expression of STI gene-lacZ fusions after 7 days of incubation in batch culture
Strain | Functional group | Gene interrupted by lacZ fusion and/or its product or function | LacZ activitya (SD) |
---|---|---|---|
AGCV19 | Envelope | ostA | 2,389 (890) |
AGCV23 | Gene expression | trxAb | 1,534 (222) |
AGCV12 | DNA metabolism | pilU | 1,025 (388) |
AGCV1 | Metabolism | argS | 1,014 (63) |
AGCV28 | Anabolism | gshA | 808 (218) |
AGCV7 | Anabolism | leuA | 718 (87) |
AGCV18 | Anabolismc | kdsB | 682 (54) |
AGCV25 | Unknown | ACIAD3229, CHP | 652 (126) |
AGCV13 | Metabolism | purA | 608 (271) |
AGCV10 | Unknown | ACIAD0865, CHP | 556 (346) |
AGCV26 | Unknown | ACIAD3343, CHP | 427 (54) |
AGCV8 | Unknown | ACIAD0615, CHP | 417 (15) |
AGCV21 | Unknown | ACIAD2746 but reversed,d CHP | 390 (93) |
AGCV2 | Unknown | ACIAD0167, CHP | 367 (48) |
AGCV4 | Gene expression | infB | 359 (54) |
AGCV14 | DNA metabolism | Putative methylase | 282 (131) |
AGCV11 | Gene expression | fusA | 255 (132) |
AGCV15 | Catabolism | mdcA | 233 (131) |
AGCV5 | Envelope | phaAB | 225 (29) |
AGCV20 | Envelope | tolB | 224 (15) |
AGCV29 | Envelope | Putative outer membrane protein | 224 (15) |
AGCV22 | Gene expression | Putative RNA-binding protein | 207 (62) |
AGCV27 | Anabolism | aroK | 173 (25) |
AGCV9 | DNA metabolism | Putative mutT | 157 (25) |
AGCV3 | Catabolism | atpA | 133 (34) |
AGCV17 | Unknownb | ACIAD1960, CHP | 92 (21) |
AGCV24 | Catabolism | almA | 56 (3) |
AGCV16 | Catabolism | Putative enoyl-coenzyme A hydratase | 50 (14) |
AGCV6 | DNA metabolism | recD | 39 (14) |
AGCV30 | Gene expression | 23S rRNA | 11 (3) |
nmol o-nitrophenol/30 min/106 CFU; see the supplemental material.
lacZ fusion is in the same orientation as trxA but is inserted after the stop codon, before the next gene (rho).
Surrounding genes that could be part of an operon with kdsB or ACIAD1960 suggest a role in transport.
lacZ gene is inserted opposite the direction of the open reading frame.