TABLE 2.
Primers used in this study
Use and primer | Sequence (5′-3′) | Tm (°C) | Product size (bp) |
---|---|---|---|
Splice overlap extension PCR | |||
SOEAtoxRS | ACC GTA GAA CCG TGA TTT AGG | 54 | 289 |
SOEBtoxRS | ATG GCG ATT ACA TTC GCG T | 55 | |
SOECtoxRS | ACG CGA ATG TAA TCG CCA T | 67 | 353 |
TTG AGT CTG AAG AAA GCG GG | |||
SOEDtoxRS | CGG CAC CAA ATT TCT ACT TG | 52 | |
SOEArpoS | TCA GCT CAG CTT AAT CCC TGA | 56 | 507 |
SOEBrpoS | CCT GAC GCA AAC TCT GA | 55 | |
SOECrpoS | TCA GAG TTG TTT GAG TCA GG | 68 | 315 |
C GTC AAACTCTTCACGGACA | |||
SOEDrpoS | ATT GCG ACC ATG GGT AGT TC | 55 | |
SOEFLtoxRSF | AGC CAC TTT ATG AGT GCC TA | 53 | 1,840 |
SOEFLtoxRSR | GGA CGA CTT TGT GAT TTA GC | 51 | |
SOEFLrpoSF | ACA GCA TTG CTT TCA TGA AC | 55 | 1,950 |
SOEFLrpoSR | AAA GAG CCG CCA AAG AAA GT | 55 | |
Real-time PCR | |||
cadA Forward | TTG TAT GCC TCA GTC GCT TG | 55 | 138 |
cadA Reverse | TCA CGC ATT TGC TAA CGA AC | 54 | |
toxR Forward | GAG ATT CCG CTG GGT TTG TA | 55 | 101 |
toxR Reverse | TGT GGC TTC TGC TGT GAA TC | 55.5 | |
rpoS Forward | ATT TGA CGT ACA CGC TCA CG | 55.5 | 165 |
rpoS Reverse | CGT CTT TGA TCC ATT GGT TG | 52 | |
16S Forward | ACG GCC TGG GGA GTA CGG TC | 60 | 234 |
16S Reverse | TTG CGC TCG TTG CGG GAC TT | 60 |