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. Author manuscript; available in PMC: 2011 Jul 16.
Published in final edited form as: J Mol Biol. 2010 May 13;400(3):618–631. doi: 10.1016/j.jmb.2010.05.015

Table 1. Kinetic properties of Cartesian reaction coordinates.

progress ensemble-averaged value (Å)
variable O TS C C-O fTS
rms O 3.26 ± 0.63 5.01 ± 0.49 6.13 ± 0.37 2.88 0.61
rms C 6.32 ± 1.21 3.76 ± 0.53 2.35 ± 0.47 −3.97 0.64
r CM,core-nmp 22.50 ± 0.47 21.94 ± 0.57 20.53 ± 0.37 −1.97 0.29
r CM,core-lid 27.94 ± 1.95 23.02 ± 1.20 21.99 ± 0.53 −5.96 0.83
r CM,nmp-lid 32.90 ± 3.12 27.67 ± 1.61 23.67 ± 1.65 −9.23 0.29

rCM,dom1-dom2 refers to the distance between the centers of mass of domains dom1 and dom2. Standard deviations reveal the variability of each reaction coordinate in each ensemble. fTS is an average of the values for the closing and opening transitions.

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