Table 1. Genes down-regulated in Trrap-deficient cells in the G0/G1 phase of cell cycle.
| Accession no. | Gene description | Function | Ratio |
|---|---|---|---|
| AI839149 | procollagen, type I, alpha 1 | Cell adhesion/ECM | 2.2 |
| AI838652 | procollagen, type I, alpha 2 | Cell adhesion/ECM | 2.8 |
| AI841822 | utrophin | Cell adhesion/ECM | 2.1 |
| AI451073 | growth arrest and DNA-damage-inducible 45 alpha | Cell cycle | 2.6 |
| AI414879 | neuroblastoma ras oncogene | Cell cycle | 2.2 |
| AI414001 | polycystic kidney disease 2 | Cell cycle | 2.7 |
| AI528671 | septin 2 | Cell cycle | 2.2 |
| AI324640 | S-adenosylmethionine decarboxylase 1 | Cell growth/mainteinance | 2.1 |
| AI839002 | actin, alpha 1, skeletal muscle | Cytoskeleton/MBP | 2.1 |
| AI838959 | actin, alpha 2, smooth muscle, aorta | Cytoskeleton/MBP | 3.0 |
| AI323827 | capping protein alpha 1 | Cytoskeleton/MBP | 2.5 |
| AI325922 | cofilin 2, muscle | Cytoskeleton/MBP | 2.9 |
| AI835976 | erythrocyte protein band 4.1-like 3 | Cytoskeleton/MBP | 2.1 |
| AI835403* | thymosin, beta 4, X chromosome | Cytoskeleton/MBP | 2.1 |
| AI894247 | tubulin, beta 5 | Cytoskeleton/MBP | 2.0 |
| AI465143 | lectin, galactose binding, soluble 1 | Galactose binding lectin | 2.4 |
| AI842654 | lymphocyte antigen 6 complex | Immune system | 2.0 |
| AI326151 | glycine N-methyltransferase | Metabolism | 2.6 |
| AI447203 | phosphate cytidylyltransferase 1, choline, alpha isoform | Metabolism | 2.0 |
| AI451732 | propionyl Coenzyme A carboxylase, beta polypeptide | Metabolism | 2.0 |
| AI426498 | protein phosphatase 1, catalytic subunit, alpha isoform | Protein biosynthesis | 2.1 |
| AI325468 | protein phosphatase 1, regulatory (inhibitor) subunit 1A | Protein biosynthesis | 2.2 |
| AI323719 | suppressor of initiator codon mutations, related sequence 1 | Protein biosynthesis | 3.0 |
| AI326836 | calpain 6 | Protein degradation | 2.2 |
| AI835498 | cystatin C | Protein degradation | 2.7 |
| AI854847 | serine (or cysteine) proteinase inhibitor, clade E, member 2 | Protein degradation | 2.1 |
| AI836278 | ubiquitin conjugating enzyme E3A | Protein degradation | 2.1 |
| AI845673 | DnaJ (Hsp40) homolog, subfamily B, member 6 | Protein transport/folding | 2.1 |
| AI429549 | translocator of inner mitochondrial membrane 17 kDa, b | Protein transport/folding | 2.0 |
| AI841014 | guanine nucleotide binding protein, alpha stimulating | Signaling | 2.2 |
| AI893646 | protein tyrosine phosphatase, receptor type, K | Signaling | 2.0 |
| AI842115 | small GTPase, homolog (Saccharomyces cerevisiae) | Signaling | 2.1 |
| AI447373 | tubby-like protein 3 | Signaling | 2.1 |
| AI323619 | nuclear factor of kappa light chain gene enhancer in B-cells 1 | Transcription | 2.0 |
| AI324044 | nuclear, factor, erythroid derived 2, like 2 | Transcription | 2.4 |
| AI448329* | RNA polymerase 1–3 (16 kDa subunit) | Transcription | 3.2 |
| AI414288 | WW domain binding protein 5 | Transcription | 2.4 |
| AI837954 | zinc finger proliferation 1 | Transcription | 2.4 |
| AI844866 | zinc finger protein 216 | Transcription | 2.4 |
| AI323712 | ATPase, H+ transporting, lysosomal, beta 56/58 kDa isoform 2 | Transport systems | 3.6 |
| AI450702 | ATPase, Na+/K+ transporting, beta 3 polypeptide | Transport systems | 2.0 |
| AI415665 | calumenin | Transport systems | 2.9 |
| AI835793 | slit homolog 2 (Drosophila) | Transport systems | 2.0 |
| AI666768 | sodium channel, nonvoltage-gated 1 beta | Transport systems | 2.1 |
| AI385598 | solute carrier family 20, member 1 | Transport systems | 2.6 |
| AI426386 | synaptosomal-associated protein, 23 kDa | Unknown function | 2.6 |
Transcripts marked by asterisk were also analyzed by northern blotting.