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. 2010 Jun 22;1(Suppl 1):S2. doi: 10.1186/2041-1480-1-S1-S2

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Copyright ©2010 Dumontier et al; licensee BioMed Central Ltd.

This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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RKB nucleotide base pairs with varying sub-edge interactions. Illustration of the RDF-based representation of molecular structure obtained from PDB files and from structure feature analysis of MC-Annotate. (A) Structure model 5 of PDB 1AJU is about a nucleotide base pair that is composed of a sub-edge interaction between the Watson-Watson sub-edge of the guanine residue at position 34 of chain A and the O2’ sub-edge of the guanine residue at position 36 of chain A. (B) Structure model 10 of PDB 1AJU is about a nucleotide base pair between guanine residue at position 34 in chain A and guanine residue at position 36 in chain A, which is composed of two sub-edge interactions – a Watson-Watson sub-edge and O2’ sub-edge, as well as a Sugar-sugar sub-edge and the O2’ sub-edge.