Table 3.
Polarity-Associated Genes in Amacrine Cells and RGCs
| Amacrine Cells Probes | RGCs Probes | Gene Symbol | Gene Name | Change Ratio Amacr/RGCs | Present (P) Algorithm |
|---|---|---|---|---|---|
| 1368710_at | Z83869CDS_at | Mark2 | MAP/microtubule affinity-regulating kinase 2 | 42.04 | P in amacr only |
| 1388657_at | rc_AI060199_at | Apc | Adenomatosis polyposis coli | 12.62 | P in both cell types |
| 1392916_at | rc_AI144722_at | Kif2c | Kinesin family member 2C | 12.21 | P in amacr only |
| 1374912_at | rc_AI060200_at | Mtap7 | Microtubule-associated protein 7 | 9.83 | P in both cell types |
| 1385636_at | rc_AI029226_at | Lcp1 | Lymphocyte cytosolic protein 1 | 5.83 | P in both cell types |
| 1392926_at | rc_AA875154_at | Hes1 | Hairy and enhancer of split 1 (Drosophila) | 4.98 | P in both cell types |
| 1387837_at | D38629_at | Ezr | Ezrin | 4.63 | P in both cell types |
| 1387036_at | D13417_G_at | — | — | 4.02 | P in both cell types |
| 1392667_at | rc_AI070793_at | Fat1 | FAT tumor suppressor homolog 1 (Drosophila) | 3.43 | P in both cell types |
| 1389210_at | rc_AI012958_at | Pten | Phosphatase and tensin homolog | 3.25 | P in both cell types |
| 1368053_at | AB005549_at | Lims1 | LIM and senescent cell antigen-like domains 1 | 2.70 | P in amacr only |
| 1377753_at | rc_AA894088_at | Clasp1 | Cytoplasmic linker associated protein 1 | 2.59 | P in both cell types |
| 1374156_at | rc_AI031043_at | Lama1 | Laminin, alpha 1 | 2.58 | P in amacr only |
| 1371326_at | rc_AI169125_at | Mpp5 | Membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5) | 2.45 | P in both cell types |
| 1370875_at | X67788_at | Csnk1a1 | Casein kinase-1, alpha-1 | 2.37 | P in both cell types |
| 1370112_at | rc_AA963447_at | Vangl2 | Vang-like 2 (van gogh, Drosophila) | 2.28 | P in both cell types |
| 1374486_at | rc_AA901314_at | Cfl1 | cofilin 1, non-muscle | 2.22 | P in both cell types |
| 1370234_at | X05834_at | Csnk2a2 | Casein kinase 2, alpha prime polypeptide | 2.17 | P in both cell types |
| 1370832_at | U06434_at | Cab39 | Calcium binding protein 39 | 1.97 | P in both cell types |
| 1368123_at | L29232_at | Gsk3b | Glycogen synthase kinase 3 beta | 1.88 | P in both cell types |
| 1373537_at | rc_AI072819_at | Igf1r | Insulin-like growth factor 1 receptor | 1.86 | P in both cell types |
| 1370267_at | X73653_at | Fzd3 | Frizzied homolog 3 (Drosophila) | 1.85 | P in amacr only |
| 1388816_at | rc_AI144591_at | RGD1309453 | Similar to hypothetical protein FLJ32884 | 1.83 | P in both cell types |
| 1375935_at | rc_AI230547_at | Scd2 | Stearoyl-Coenzyme A desaturase 2 | 1.80 | P in both cell types |
| 1367654_at | rc_AI103370_at | Ilk | Integrin linked kinase | 1.76 | P in both cell types |
| 1372244_at | rc_AA849965_at | Cdc42 | Cell division cycle 42 homolog (S. cerevisiae) | 1.73 | P in both cell types |
| 1399105_at | rc_AA928279_at | Pard3 | Par-3 (partitioning defective 3) homolog (C. elegans) | 1.61 | P in both cell types |
| 1375994_at | rc_AA946326_at | Fn1 | Fibronectin 1 | 1.39 | P in both cell types |
| 1371429_at | rc_AI170693_at | Prkci | Protein kinase C, iota | 1.27 | P in both cell types |
| 1370197_a_at | M18332_S_at | Clasp2 | CLIP associating protein 2 | 1.23 | P in both cell types |
| 1369149_at | D31873_G_at | Ctnna1 | Catenin (cadherin associated protein), alpha 1 | 1.16 | P in both cell types |
| 1390156_a_at | rc_AA800882_G_at | Llgl1 | Lethal giant larvae homolog 1 (Drosophila) | 1.10 | P in both cell types |
| 1381526_at | rc_AI044894_at | Prkcz | Protein kinase C, zeta | 1.07 | P in both cell types |
| 1369997_at | rc_AI101690_at | Dag1 | Dystroglycan 1 | 1.03 | P in both cell types |
| 1375685_at | rc_AA850743_at | Dchs1 | Dachsous 1 (Drosophila) | 1.01 | P in both cell types |
| 1387777_at | rc_AI176814_at | Cfl1 | Cofilin 1, non-muscle | −1.10 | P in both cell types |
| 1370287_a_at | M60666_S_at | Dlgn1 | Discs, large homolog 1 (Drosophila) | −1.13 | P in both cell types |
| 1371725_at | rc_AA944803_at | Prickle2 | Prickle-like 2 (Drosophila) | −1.13 | P in both cell types |
| 1379369_at | rc_AI171526_at | Nckap1 | NCK-associated protein 1 | −1.18 | P in both cell types |
| 1387871_at | rc_AI235500_at | Cap1 | CAP, adenytate cyclase-associated protein 1 (yeast) | −1.22 | P in both cell types |
| 1371921_at | rc_AI177170_at | Tpm1 | Tropomyosin 1, alpha | −1.28 | P in both cell types |
| 1374646_at | rc_AA955819_G_at | Pard6a | Par-6 (partitioning detective 6,) homolog alpha (C. elegans) | −1.34 | P in both cell types |
| 1373047_at | rc_AI179206_at | Bin3 | Bridging integrator 3 | −1.54 | P in both cell types |
| 1368099_at | rc_AI175481_at | Pak1 | P21 (CDKN1A)-activated kinase 1 | −1.85 | P in both cell types |
| 1368809_at | rc_AA850040_at | Dvl1 | Dishevelled, dsh homolog 1 (Drosophila) | −1.86 | P in both cell types |
| 1389093_at | rc_AI175989_at | — | — | −2.30 | P in both cell types |
| 1367668_a_at | rc_AA875269_at | Myh9 | Myosin, heavy polypeptide 9, non-muscle | −2.37 | P in both cell types |
| 1370825_a_at | rc_AA925473_G_art | — | — | −2.80 | P in both cell types |
| 1370184_at | rc_AI177598_F_at | Prickle1 | Prickle-like 1 (Drosophila) | −2.82 | P in both cell types |
| 1370224_at | rc_AI008865_S_at | Limk1 | LIM domain kinase 1 | −3.26 | P in both cell types |
| 1371407_at | rc_AI105087_at | Ccl4 | Chemokine (C-C motif) ligand 4 | −3.38 | P in both cell types |
| 1385430_at | rc_AA799637_at | Stat3 | Signal transducer and activator of transcription 3 | −5.33 | P in both cell types |