Table 3.
Genes with >10-fold decreased expression during cell culture
| Abundance (f. u.) | ||
|---|---|---|
| Gene Title | Day 5/Day0 | GO Biological Process/Molecular Function |
| B-fos | 0.01 | Regulation of cell cycle & transcription |
| V-fos | 0.01 | DNA methylation & regulation of transcription |
| Activity-regulated cytoskeleton-associated protein | 0.02 | |
| Peptidase inhibitor 3, skin-derived (SKALP) | 0.04 | Endopeptidase inhibitor activity |
| CD14 antigen | 0.04 | Phagocytosis |
| Progastricsin (pepsinogen C) | 0.04 | Proteolysis |
| Serpin peptidase inhibitor, clade A | 0.04 | Acute-phase response |
| Superoxide dismutase 2, mitochondrial | 0.04 | Response to superoxide |
| Chemokine (C-C motif) ligand 3 | 0.04 | Calcium ion homeostasis |
| Chemokine (C-C motif) ligand 20 | 0.05 | Chemotaxis |
| Serine peptidase inhibitor, Kazal type 1 | 0.05 | Endopeptidase inhibitor |
| S100 calcium binding protein A9 (calgranulin B) | 0.05 | Inflammatory response |
| Serum/glucocorticoid regulated kinase | 0.05 | Protein amino acid phosphorylation |
| Regulator of G protein signalling 2, 24 kDa | 0.05 | Cell cycle |
| GTP binding protein overexpressed in skeletal muscle | 0.06 | Immune response/signal transduction |
| Regulator of G protein signalling 1 | 0.07 | Immune response/signal transduction |
| Ras-related associated with diabetes | 0.07 | Small GTPase mediated signal transduction |
| S100 calcium binding protein A8 (calgranulin A) | 0.07 | Inflammatory response |
| Surfactant protein C | 0.07 | Respiratory gaseous exchange |
| Chemokine (C-X-C motif) ligand 1 | 0.07 | Chemotaxis |
| S100 calcium binding protein A12 (calgranulin C) | 0.07 | Xenobiotic metabolism/inflammatory response |
| Microseminoprotein, β | 0.08 | Regulation of progression through cell cycle |
| G0/G1 switch 2 | 0.08 | Regulation of cell cycle |
| Interleukin-8 | 0.08 | Angiogenesis/chemotaxis |
| Hemoglobin, α 2 | 0.08 | Oxygen transport |
| Vanin 1 | 0.08 | Nitrogen compound metabolism |
| Colony-stimulating factor 3 (granulocyte) | 0.08 | Cellular defense response/proliferation/differentiation |
| Interleukin-6 (interferon, β2) | 0.08 | Acute-phase response |
| Defensin, α1/3 | 0.08 | Xenobiotic metabolism/defense response |
| Interleukin-1, β | 0.09 | Inflammatory response/regulation cell cycle |
| Prostaglandin E receptor 4 (subtype EP4) | 0.09 | Immune response/signal transduction |
| Nuclear receptor subfamily 4, group A, member 2 | 0.09 | Transcription |
| Immunoglobulin heavy constant α1 | 0.09 | Immune response |
Mean values from 5 experiments; P < 0.003 day 5 vs. day 0.