Table 1.
Oligonucleotides for reporter gene cloning, mutagenesis, EMSA, ChIP assay, and ribonucleotide sequences for siRNA targeting of human AhR
| Name | Sequence 5′ → 3′ |
|---|---|
| −2.3kb-KpnI-forward | GGTACCGCTGGGATTATGCGCTTGTAC |
| −761bp-XhoI-forward | CATACTCTCGAGTTACCCGGCTTTC |
| −238bp-SmaI-forward | GCTCCCGGGCTCCAGGCGGCGGCGC |
| −72bp-HindIII-reverse | TCCAAGCTTACCTCAAGCAGGGATGCTG |
| XRE1 wt | −119GAGCGGACGGCGTGGCGGCCGGAG- |
| XRE1 mut | −119GAGCGGACGGCTATGCGGCCGGAG−9 |
| XRE2 wt | −181CGGGGACGGGGCGTGCCGCCGGCG−157 |
| XRE2 mut | −181CGGGGACGGGGCTATCCGCCGGCG−157 |
| XRE3 wt | −264GCCGCGCTCGCACGCGGTGCGCAGC−240 |
| XRE3 mut | −264GCCGCGCTCGCAAACGGTGCGCAGC−240 |
| MARE wt | −144AGCGCTGCTTCACAGGCTCC−124 |
| MARE deletion | −144AGCG - -TTCACAGGCTCC−124 |
| Primers for ChIP assay | |
| Forward | CTGCTACCCTCTCCATCCAG |
| Reverse | ACCTCAAGCCAGGGATGCTG |
| Sequence of AhR siRNA | |
| 1Sense | GUGGAAGUAUUGAUCCAUCUUUCCCU |
| Antisense | CACCUUCAUAACUAGGUAGAAAGGG |
| 2Sense | AAUGCAACAUCAAAGAAGCUCUUGGCU |
| Antisense | TTACCGUUGUAGUUUCUUCGAGAACC |
| 3Sense | AUAAAUAGACUCAUCUUGUUGCAUCAU |
| Antisense | TAUUUAUCUGAGUAGAACAACGUAG |
Antisenses were made at the same length and complementary to the sense sequence. ChIP, chromatin immunoprecipitation; siRNA, small interfering RNA; AhR, aryl hydrocarbon receptor; wt, wild type; mut, mutant.