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. 2010 Apr 15;299(1):G126–G135. doi: 10.1152/ajpgi.00522.2010

Table 1.

Oligonucleotides for reporter gene cloning, mutagenesis, EMSA, ChIP assay, and ribonucleotide sequences for siRNA targeting of human AhR

Name Sequence 5′ → 3′
−2.3kb-KpnI-forward GGTACCGCTGGGATTATGCGCTTGTAC
−761bp-XhoI-forward CATACTCTCGAGTTACCCGGCTTTC
−238bp-SmaI-forward GCTCCCGGGCTCCAGGCGGCGGCGC
−72bp-HindIII-reverse TCCAAGCTTACCTCAAGCAGGGATGCTG
XRE1 wt −119GAGCGGACGGCGTGGCGGCCGGAG-
XRE1 mut −119GAGCGGACGGCTATGCGGCCGGAG−9
XRE2 wt −181CGGGGACGGGGCGTGCCGCCGGCG−157
XRE2 mut −181CGGGGACGGGGCTATCCGCCGGCG−157
XRE3 wt −264GCCGCGCTCGCACGCGGTGCGCAGC−240
XRE3 mut −264GCCGCGCTCGCAAACGGTGCGCAGC−240
MARE wt −144AGCGCTGCTTCACAGGCTCC−124
MARE deletion −144AGCG - -TTCACAGGCTCC−124
Primers for ChIP assay
    Forward CTGCTACCCTCTCCATCCAG
    Reverse ACCTCAAGCCAGGGATGCTG
Sequence of AhR siRNA
1Sense GUGGAAGUAUUGAUCCAUCUUUCCCU
    Antisense CACCUUCAUAACUAGGUAGAAAGGG
2Sense AAUGCAACAUCAAAGAAGCUCUUGGCU
    Antisense TTACCGUUGUAGUUUCUUCGAGAACC
3Sense AUAAAUAGACUCAUCUUGUUGCAUCAU
    Antisense TAUUUAUCUGAGUAGAACAACGUAG

Antisenses were made at the same length and complementary to the sense sequence. ChIP, chromatin immunoprecipitation; siRNA, small interfering RNA; AhR, aryl hydrocarbon receptor; wt, wild type; mut, mutant.