Table 4.
Assessing the quality of protein structures
| PDB | Protein | Resolution | Accuracy | MCC |
|---|---|---|---|---|
| 1s7bB | EmrE | 3.8 | 0.51 | -0.09 |
| 2f2mA | EmrE | 3.7 | 0.48 | -0.19 |
| 1jsqA | MsbA | 4.5 | 0.55 | -0.06 |
| 1pf4A | MsbA | 3.8 | 0.55 | 0.10 |
| 1z2rA | MsbA | 4.2 | 0.63 | 0.26 |
| 1l7vA | MsbA | 3.2 | 0.81 | 0.64 |
| 2hydA | MsbA | 3.0 | 0.85 | 0.69 |
Agreement between predicted and structurally derived accessibility on six PDB-structures. The four structures at the top are published structures that have been removed from the database due to discovered anomalies. The two structure at the bottom are recent structures of proteins from the same protein families that are present in PDB.