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. Author manuscript; available in PMC: 2010 Jul 15.
Published in final edited form as: J Comput Chem. 2008 Nov;29(15):2582–2592. doi: 10.1002/jcc.21014

Table 1.

Energy parameters of the coarse grain DNA model.

ID bead parameters
name group Ri [Å] Ai [(RT)0.5] qi
1 GP1 phosphate 2.640 0.600 −0.700
2 GS1 sugar 2.900 0.600 0.000
3 GS2 sugar 2.650 0.600 0.000
4 GA1 adenine 2.530 0.600 0.000
5 GA2 adenine 2.650 0.600 0.000
6 GA3 adenine 2.590 0.600 0.000
7 GG1 guanine 2.530 0.600 0.000
8 GG2 guanine 2.650 0.600 0.000
9 GG3 guanine 2.830 0.600 0.000
10 GC1 cytosine 2.840 0.600 0.000
11 GC2 cytosine 2.650 0.600 0.000
12 GT1 thymine 2.840 0.600 0.000
13 GT2 thymine 2.940 0.600 0.000