Table 1.
Locus | Position Btau4.0 | Ref1 | Sample2 | N3 | p04 | HWE5 p-value |
---|---|---|---|---|---|---|
rs29027392 | 9844454 | BTA | DTE | 820 | 0.03 | 0.0080 (1 breed) |
rs41613225 | 9874407 | BTA | DTE | 820 | 0.34 | 0.0103 (1 breed) |
rs41664397 | 11938389 | BTA | DTE | 820 | 0.15 | 0.0053 (1 breed) |
Ars-BFGL-NGS-70946 | 14471603 | Illumina | DTE | 819 | 0.38 | 0.0173 (1 breed) |
rs29025980 | 14925193 | BTA | DTE | 875 | 0.23 | < 0.05 (3 breeds) |
BRM | 525 | 0.05 | 1.34e-38 | |||
COM | 196 | 0.27 | 2.36e-24 | |||
rs43616884 | 14937129 | BTB | DTE | 915 | 0.28 | ns |
BRM | 546 | 0.05 | 0.0277 | |||
COM | 207 | 0.20 | ns | |||
rs29025985 | 14943961 | BTA (GWAS) | DTE | 812 | 0.68 | ns |
BRM | 464 | 0.09 | ns | |||
COM | 186 | 0.37 | ns | |||
rs29025981 | 14944238 | BTA (GWAS) | DTE | 859 | 0.32 | ns |
BRM | 517 | 0.91 | ns | |||
COM | 201 | 0.63 | ns | |||
rs41594962 | 14979585 | BTA | DTE | 1042 | 0.29 | 0.0256 (1 breed) |
BRM | 545 | 0.01 | ns | |||
COM | 207 | 0.20 | ns | |||
ss161109814 | 14996440 | This paper | DTE | 1037 | 0.40 | ns |
BRM | 526 | 0.06 | ns | |||
COM | 205 | 0.24 | ns | |||
ss161109807 | 15002496 | This paper | DTE | 1027 | 0.28 | ns |
BRM | 525 | 0.62 | ns | |||
COM | 210 | 0.49 | ns | |||
ss161109797 | 15003391 | This paper | DTE | 1032 | 0.04 | 0.0337 (1 breed) |
BRM | 526 | 0.05 | ns | |||
COM | 212 | 0.03 | ns | |||
rs29023635 | 15034937 | BTA | DTE | 914 | 0.69 | ns |
BRM | 549 | 0.06 | ns | |||
COM | 213 | 0.41 | ns | |||
rs29023639 | 15035100 | BTA | DTE | 296 | < 0.01 | ns |
BRM | 548 | < 0.01 | ns | |||
COM | 181 | 0.01 | ns | |||
rs29014770 | 15102776 | BTA | DTE | 901 | 0.68 | ns |
BRM | 544 | 0.99 | ns | |||
COM | 202 | 0.72 | ns | |||
rs41657550 | 17147707 | BTA | DTE | 820 | 0.68 | ns |
Ars-BFGL-NGS-25507 | 18216232 | Illumina | DTE | 819 | 0.75 | < 0.05 (2 breeds) |
1 Database in which the markers were described, BTA - BCM Interbreed SNP, BTB - BCM Genome Assembly SNP, Illumina - BovineSNP50®, GWAS - significant markers at the genome wide association study.
2 DTE - dairy tick experiment, BRM - Brahman, COM - Tropical Composite.
3 Number of individuals tested.
4 Frequency of the allele closer to a in the alphabet.
5 Hardy-Weinberg equilibrium test p-value, ns - not significant.