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. Author manuscript; available in PMC: 2011 Jan 1.
Published in final edited form as: Nat Methods. 2010 Jun 13;7(7):528–534. doi: 10.1038/nmeth.1470

Figure 5. Expressed repeat elements surveyed by CAGEscan.

Figure 5

Expression in tags per million of LINE, LTR, SINE, and srpRNA repeated elements in cytoplasmic (C) and nuclear fractions (N) from total and non-polyadenlyated RNA (poly-A−). Adjacent bars indicate technical replicates. Whisker plots summaries data from six additional biological replicates. The boxplots and whisker plots sub-panels use different scales. The nucleus appears strongly enriched for LINE, LTR and SINE transcripts, which are non-polyadenylated, while the cytoplasm appears strongly enriched in srpRNA, both in the total RNA and the non-polyadenylated fraction.