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. Author manuscript; available in PMC: 2011 Jul 1.
Published in final edited form as: J Steroid Biochem Mol Biol. 2010 Apr 14;121(1-2):124–129. doi: 10.1016/j.jsbmb.2010.03.086

Table 1.

Structural comparison of 1lbd and 1xdk structures.

RESIDUE SELECTION NUMBER
OF
RESIDUES		 RMSD GDT
0.5 1.0 2.0 5.0 7.5 10.0
ALL 217 7.36 0.57 0.81 0.89 0.97 1.00 1.00
CONSERVED REGIONS 71 0.34 1.00 1.00 1.00 1.00 1.00 1.00
LIGAND ACTIVE SITE 19 2.97 0.53 0.74 0.84 1.00 1.00 1.00
COFACTOR ACTIVE SITE 16 14.79 0.56 0.56 0.56 0.56 0.63 0.75
OTHER 111 6.28 0.28 0.68 0.83 0.97 1.00 1.00

RMSD (root mean square deviation) is defined as square root of averaged distances between corresponding atoms in two sets.

GDT (global distance test) is defined as a number of residues in a subset, for which rmsd is below given threshold, divided by total number of residues.