Table 1.

RNA and DNA scaffold of pol II transcribing complexes

Complex A: (Damaged template 29mer with 9mer RNA)
RNA: 5′ AUGGAGAGG 3′
DNA: 3′ CTACCTCTCCTG*CCCCACCAATACCCATC 5′
DNA: 5′ GTGGTTATGGGTAG 3′
Complex A′: (Nondamaged template 29mer with 9mer RNA)
RNA: 5′ AUGGAGAGG 3′
DNA: 3′ CTACCTCTCCTGCCCCACCAATACCCATC 5′
DNA: 5′ GTGGTTATGGGTAG 3′
Complex B: (Damaged template 29mer with 10mer RNA)
RNA: 5′ AUGGAGAGGA 3′
DNA: 3′ CTACCTCTCCTG*CCCCACCAATACCCATC 5′
DNA: 5′ GTGGTTATGGGTAG 3′
Complex B′: (Nondamaged template 29mer with 10mer RNA)
RNA: 5′ AUGGAGAGGA 3′
DNA: 3′ CTACCTCTCCTGCCCCACCAATACCCATC 5′
DNA: 5′ GTGGTTATGGGTAG 3′
Complex C: (Damaged template 29mer with 11mer RNA)
RNA: 5′ AUGGAGAGGAC3′
DNA: 3′ CTACCTCTCCTG*CCCCACCAATACCCATC 5′
DNA: 5′ GTGGTTATGGGTAG 3′
Complex C′: (Non-damaged Template 29mer with 11mer RNA)
RNA: 5′ AUGGAGAGGAC3′
DNA: 3′ CTACCTCTCCTGCCCCACCAATACCCATC 5′
DNA: 5′ GTGGTTATGGGTAG 3′

G*: cDPCP-dG.