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. Author manuscript; available in PMC: 2011 Jun 15.
Published in final edited form as: Biochemistry. 2010 Jun 15;49(23):4804–4812. doi: 10.1021/bi100207k

Table 1.

Kinetics, affinities and efficacies of ddKIIIA and analogs in blocking NaV1.2a

Peptide kon koff Kd IC50 (95% C.I.) rINad

µM1min1 min1 µM µM %
ddKIIIA 0.75 ± 0.015 0.01 ± 0.0015 0.013 ± 0.002 N.A.b 5 ± 1.1
ddKIIIA[K7A] 0.69 ± 0.11 0.13 ± 0.03 0.19 ± 0.05 0.21 (0.17 – 0.25) 24 ± 2.1
ddKIIIA[K7D] 0.08 ± 0.005 0.083 ± 0.02 1.04 ± 0.26 1 (0.85 – 1.2) 5 ± 2.4
ddKIIIA[K7S] 0.77 ± 0.07 0.11 ± 0.02 0.14 ± 0.03 0.31 (0.26 – 0.37) 29 ± 1.7
ddKIIIA[K7F] 0.55 ± 0.05 0.3 ± 0.04 0.55 ± 0.09 0.6 (0.52 – 0.7) 6 ± 2.0
ddKIIIA[K7G] 1.2 ± 0.1 0.67 ± 0.11 0.56 ± 0.1 0.47 (0.36 – 0.6) 29 ± 2.6
ddKIIIA[K7L] 0.39 ± 0.15 0.2 ± 0.009 0.51 ± 0.2 0.87 (0.76 – 1.0) 7 ± 1.7
ddKIIIA[K7V] 0.33 ± 0.018 0.091 ± 0.014 0.28 ± 0.045 0.34 (0.3 – 0.38) 14 ± 1.4
ddKIIIA[K7T] 0.1 ± 0.015 0.09 ± 0.006 0.9 ± 0.15 2.3 (1.8 – 3.0) 19 ± 3.3
ddKIIIA[K7dap] 1.2 ± 0.06 0.06 ± 0.008 0.05 ± 0.007 0.13 (0.09 – 0.19) 18 ± 1.3
KIIIAb 0.3 ± 0.03 0.0016 ± 0.0016 0.0053 ± 0.005 N.A.c 5 ± 3
KIIIA[K7A]b 0.13 ± 0.006 0.015 ± 0.005 0.115 ± 0.038 N.A.c 23 ± 1
KIIIA[K7D] 0.02 ± 0.002 0.008 ± 0.001 0.4 ± 0.06 N.A.c 6 ± 2.0
a

Rate constants were determined as described under Materials and Methods. Steady-state IC50 and rINa values were obtained with data and equation presented in Fig. 2. Standard deviation and 95% Confidence Intervals (95% C.I.) were calculated from at least three independent experiments using Prism software. For comparison, also shown are data for KIIIA and KIIIA[K7A] from ref. (18).

b

Data from ref. (18).

c

IC50 value was not obtained, because the rates of block using peptide concentrations in the range of the expected IC50 were too slow to provide accurate steady-state levels of block within the time frame of the experiments.

d

rINa for ddKIIIA, KIIIA, and KIIIA[K7A] were directly measured using a saturating peptide concentration, and those for the remaining peptides represent the plateaus of the best-fit curves as described in Fig. 2.