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. 2010 Jul;185(3):969–982. doi: 10.1534/genetics.110.115543

TABLE 3.

Significant associations between genotypes and aridity gradients

SNP locusa Gene product At locusb E-valuec AId r2e Pf Q
0-16169-01-216syn Hexose:hydrogen symporter At5g26340 3E-118 AI1 0.027 4.79E-08 1.84E-04
3E-118 AI2 0.040 1.79E-10 1.03E-06
3E-118 AI4 0.015 2.74E-05 3.49E-02
0-2179-01-216nc(utr) Photosystem II protein At2g06520 2E-24 AI1 0.034 6.31E-07 1.81E-03
2E-24 AI2 0.051 4.48E-11 5.14E-07
2E-24 AI4 0.029 1.30E-06 2.50E-03
0-10240-01-410syn C3HC4-type RING finger At4g26400 1E-05 AI2 0.039 9.63E-07 2.21E-03
0-18281-01-345nc(intron) MATE efflux family protein At4g25640 9E-72 AI2 0.022 8.23E-06 1.35E-02
UMN-6195-01-397syn UDP-galactose transporter At3g59360 2E-88 AI3 0.029 2.50E-05 3.49E-02

False discovery rate Q < 0.05.

a

nc, noncoding; ns, nonsynonymous; syn, synonymous; utr, untranslated region.

b

“At locus” refers to the locus tag for Arabidopsis thaliana.

c

E-values from tBLASTx analysis of the loblolly pine EST contigs against the NCBI refseq RNA database for Arabidopsis.

d

AI, aridity index.

e

r2 is that from a general linear model with environment as the dependent variable and corrected genotypic values as explanatory variables.

f

P-values listed in boldface type are also significant using a Bonferroni correction. Significance refers to the (N − k − 1)r2 statistic of Price et al. (2006).