Table 2.
GO Slim Terms Over Represented in Candidate Genes from Comparison Between Clark Plants Grown in Iron Sufficient and Iron Deficient Hydroponics Solutions
| GO Slim ID | GO Term Description | Number of Genes with GO ID | Bonferroni Corrected P-Value |
|---|---|---|---|
| GO:0000004 BP | Unknown Function | 128 | 0 |
| GO:0006270 BP | DNA Replication Initiation | 10 | 0 |
| GO:0009611 BP | Response to Wounding | 36 | 0 |
| GO:0009695 BP | Jasmonic Acid Biosynthesis | 24 | 0 |
| GO:0006826 BP | Iron Ion Transport | 9 | 1.2E-07 |
| GO:0006879 BP | Iron Ion Homeostasis | 10 | 3.6E-07 |
| GO:0010039 BP | Response to Iron Ion | 9 | 5.28E-06 |
| GO:0009617 BP | Response to Bacterium | 8 | 0.000018 |
| GO:0006275 BP | Regulation of DNA Replication | 4 | 0.00303 |
| GO:0006972 BP | Hyperosmotic Response | 4 | 0.00303 |
| GO:0030397 BP | Membrane Disassembly | 8 | 0.004381 |
| GO:0008299 BP | Isoprenoid Biosynthesis | 10 | 0.006706 |
| GO:0009408 BP | Response to Heat | 20 | 0.014334 |
| GO:0019373 BP | Epoxygenase P450 | 5 | 0.045066 |
| GO:0008199 MF | Ferric Iron Binding | 9 | 0 |
| GO:0008094 MF | DNA-dependent ATPase Activity | 10 | 1.29E-06 |
| GO:0016165 MF | Lipoxygenase Activity | 12 | 0.000128 |
| GO:0047763 MF | Cafeate O-Methyltransferase | 8 | 0.001014 |
| GO:0030337 MF | DNA Polymerase Processivity Factor | 4 | 0.001426 |
| GO:0005544 MF | Calcium Dependent Lipid Binding | 8 | 0.001965 |
| GO:0009978 MF | Allene Oxide Synthase | 5 | 0.017949 |
| GO:0046423 MF | Allene Oxide Cyclase | 4 | 0.020157 |
| GO:0008815 MF | Citrate (Pro-3S) Lyase | 5 | 0.029946 |
| GO:0009346 CC | Citrate Lyase | 5 | 0.002807 |
GO Slim ID's statistically over or under represented in the list of differentially expressed genes comparing Clark plants grown in iron sufficient and iron limiting hydroponics conditions in comparison to their presence on the Affymetrix® GeneChip®. The GO Slim Column provides the GO Slim ID number and corresponding category. GO Slim categories are Biological Process (BP), Molecular Function (MF), and Cellular Component (CC). The GO Term Description column contains the best description for the GO Slim ID. The number of genes with GO ID column is the number of genes differentially expressed between Clark plants grown in iron sufficient and iron deficient hydroponics solutions with the corresponding GO Slim ID. The Bonferroni Corrected P-value is the statistical significance of the GO Slim ID. Only GO Slim IDs with P-values equal to or less than 0.5 were considered statistically over or under represented in the list of differentially expressed genes in comparison to the presence of the GO Slim ID on the GeneChip®.