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. Author manuscript; available in PMC: 2010 Jul 21.
Published in final edited form as: Laryngoscope. 2010 Mar;120(3):504–510. doi: 10.1002/lary.20745

TABLE 1.

Candidate H-2b-Restricted CTL Epitopes in HPV-11 E6aa41-70.

BIMAS
SYFPEITHI
Restriction Element Peptide Length Peptide Sequence Position Score Peptide Sequence Position Score
Db 8 N/A N/A
9 YAYKNLKVV 46–54 30 YAYKNLKVV 46–54 22
10 VVWRDNFPFA 53–62 25.9 YAYKNLKVW 46–55 17
Kb 8 YAYAYKNL 44–51 120 YAYAYKNL 44–51 28
9 IYAYAYKNL 43–51 26.4 N/A
10 EIYAYAYKNL 42–51 144 N/A

BIMAS, BioInformatics and Molecular Analysis Section, Center for Information Technology, NIH; SYFPEITHI, EU Biomed.

CTL = cytotoxic T cell line.