Table 2.

An overview of mappings between REMc clusters and clusters obtained by other methods. Based on the total number of overlapping genes and the relative size of each cluster, REMc clusters were matched to Hc (Euclidian distance and complete linkage) and KMc (Euclidian distance or Pc) clusters. A match was defined as at least 0.10 overlap in both directions and 0.25 overlap in one direction. The best matches are in bold.

GOid_z rank	LL rank	REMc ID	No. of genes	Matches	Best match	He_rank	No. of genes	No. of match	EM (%)	Hc (%)	KMc_Eu_rank	No. of genes	No. of match	EM (%)	K_EU (%)	KMc_Pc_rank	No. of genes	No. of match	EM (%)	K_Pc (%)
1	1	0_1	26	All	K_Euc	1	80	22	0.85	0.28	1	24	23	0.88	0.96	1	28	23	0.88	0.82
2	7	0_0	18	All	K_Euc	3	20	11	0.61	0.55	5	26	16	0.89	0.62	7	6	6	0.33	1.00
2	7	0_0	18			2	16	4	0.22	0.25						4	25	9	0.50	0.36
3	3	2_0_0	15	All	N∕A	4	12	10	0.67	0.83	2	32	14	0.93	0.44	3	12	9	0.60	0.75
	3					6	9	3	0.20	0.33						13	8	4	0.27	0.50
4	13	1_2	23	N∕A	N∕A	1	80	10	0.43	0.13	10	14	6	0.26	0.43	6	37	8	0.35	0.22
4	13	1_3	24			5	49	7	0.30	0.14	7	28	8	0.35	0.29	2	23	6	0.26	0.26
5	8	2_0_2	20	Hc; K_Euc	K_Euc	1	80	15	0.75	0.19	3	23	12	0.60	0.52	5	28	8	0.40	0.29
5	8	2_0_2	20			13	4	2	0.10	0.50						4	25	5	0.25	0.20
6	14	2_2_1	19	All	K_Euc	10	12	7	0.37	0.58	9	9	7	0.37	0.78	17	13	7	0.37	0.54
6	14	2_2_1	19			14	12	6	0.32	0.50						8	21	5	0.26	0.24
6	14	2_2_1	19			9	10	4	0.21	0.40						3	12	3	0.16	0.25
7	10	3_2	24	K_Euc	K_Euc	8	9	5	0.21	0.56	6	39	13	0.54	0.33	14	9	5	0.21	0.56
7	10	3_2	24			5	49	6	0.25	0.12	11	11	3	0.13	0.27	12	8	3	0.13	0.38
7	10	3_2	24			2	16	4	0.17	0.25						16	9	3	0.13	0.33
8	12	2_2_0	9	All	Hc	7	7	5	0.56	0.71	11	11	4	0.44	0.36	10	11	4	0.44	0.36
8	12	2_2_0	9			8	9	3	0.33	0.33	4	24	3	0.33	0.13	14	9	3	0.33	0.33
9	11	2_0_1	12	Hc: K_Euc	Hc	12	18	6	0.50	0.33	8	17	5	0.42	0.29	9	21	5	0.42	0.24
9	11	2_0_1	12			3	20	4	0.33	0.20						4	25	4	0.33	0.16
10	17	2_1	21	K_Euc; K_Pc	K_Euc	16	9	6	0.29	0.67	15	7	7	0.33	1.00	8	21	8	0.38	0.38
10	17	2_1	21								16	3	2	0.10	0.67	5	28	6	0.29	0.21
10	17	2_1	21								12	8	4	0.19	0.50
10	17	2_1	21								3	23	6	0.29	0.26
11	4	3_1	34	K_Euc	K_Euc	1	80	17	0.50	0.21	7	28	15	0.44	0.54	5	28	9	0.26	0.32
11	4	3_1	34			5	49	10	0.29	0.20	6	39	11	0.32	0.28	6	37	10	0.29	0.27
11	4	3_1	34
12	9	1_3	10	K_Euc	K_Euc	3	20	4	0.40	0.20	5	26	10	1.00	0.38	4	25	4	0.40	0.16
12	9	1_3	10			2	16	3	0.30	0.19						2	23	3	0.30	0.13
12	9	1_3	10													12	8	2	0.20	0.25
13	15	1_1	11	Hc	Hc	15	6	4	0.36	0.67	4	24	6	0.55	0.25	6	37	5	0.45	0.14
13	15	1_1	11			9	10	3	0.27	0.30	8	17	4	0.36	0.24
14	16	1_0	16	K_Euc	K_Euc	5	49	11	0.69	0.22	13	10	7	0.44	0.70	15	23	5	0.31	0.22
14	16	1_0	16								10	14	6	0.38	0.43	1	28	4	0.25	0.14
15	5	3_0	9	K_Euc; K_Pc	K_Euc						14	11	7	0.78	0.64	15	23	7	0.78	0.30
16	6	3_3	27	K_Euc	K_Euc	11	14	6	0.22	0.43	17	11	10	0.37	0.91	11	15	6	0.22	0.40
16	6	3_3	27			14	10	4	0.15	0.40	6	39	15	0.56	0.38	17	13	4	0.15	0.31
16	6	3_3	27			17	12	4	0.15	0.33						10	11	3	0.11	0.27
17	2	1_4	3	N∕A