Table 5.
Performance comparison with other methods on CASP7 benchmark dataset (%)
| Predictor | 1-D | 2-D | 3-Da | All-D |
|---|---|---|---|---|
| DomSVRb | 82.26 (51/62) | 46.67 (14/30) | 33.33 (1/3)c | 69.47 (66/95) |
| chopb | 53.66 (22/41) | 28.57 (6/21) | 0 (0/3) | 43.08 (28/65) |
| chop_homob | 58.33 (21/36) | 36.36 (8/22) | 0 (0/3) | 47.54 (29/61) |
| DomFOLDb | 97.96 (48/49) | 20.69 (6/29) | 0 (0/3) | 66.67 (54/81) |
| DPSb | 78.95 (30/38) | 42.31 (11/26) | 0 (0/3) | 61.19 (41/67) |
| Distillb | 77.42 (48/62) | 46.67 (14/30) | 33.33 (1/3) | 66.32 (63/95) |
| NN_PUT_lab | 77.59 (45/58) | 10.34 (3/29) | 33.33 (1/3) | 54.44 (49/90) |
| BAKER-ROSETTADOM | 88.52 (54/61) | 80 (24/30) | 0 (0/3) | 82.98 (78/94) |
| DomSSEA | 97.44 (38/39) | 30.77 (8/26) | 33.33 (1/3) | 69.12 (47/68) |
| FOLDpro | 98.36 (60/61) | 76.67 (23/30) | 33.33 (1/3) | 89.36 (84/94) |
| HHpred1 | 96 (48/50) | 14.29 (4/28) | 33.33 (1/3) | 65.43 (53/81) |
| HHpred3 | 94.12 (48/51) | 17.24 (5/29) | 33.33 (1/3) | 65.06 (54/83) |
| Ma-OPUS-DOM | 87.8 (36/41) | 76.92 (20/26) | 33.33 (1/3) | 81.43 (57/70) |
| Robetta-Ginzu | 83.61 (51/61) | 86.67 (26/30) | 33.33 (1/3) | 82.98 (78/94) |
| Meta-DP | 97.56 (40/41) | 14.81 (4/27) | 0 (0/3) | 61.97 (44/71) |
| Random predictor | 65.21 (40.43/62) | 31.51 (9.45/30) | 3.17 (0.0951/3) | 52.61 (49.98/95) |
a
“1-D”, “2-D”, and “3-D” denote that each tested protein chain is a 1-domain one, 2-domain one, and chain with three or more domains, respectively. In addition “All-D” stands for all tested protein chains
b
Ab initio method
c
The numbers in parentheses denote correctly predicted chains and the amount of chains used to the prediction