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. Author manuscript; available in PMC: 2010 Jul 26.
Published in final edited form as: Z Phys Chem (N F). 2008;222(8-9):1359–1374. doi: 10.1524/zpch.2008.5395

Table 1.

Structural parameters along a reactive trajectory.

Parameters Reactant Int.I TS Int.II Product
Relative Energy (kcal/mol) 0.00 1.57 24.05 −0.73 −34.40
d(C1′−N9) (Å) 1.52 2.35 2.50 2.65 3.39
d(C1′−OP) (Å) 3.20 2.75 2.78 2.39 1.47
d(C1′−O4′) (Å) 1.46 1.26 1.31 1.20 1.42
d(O4′−O5′) (Å) 3.14 3.06 2.96 3.32 3.20
d(O4′−OP) (Å) 3.89 3.15 3.28 3.05 2.25
charge OP (electron) −0.89 −0.80 −0.84 −0.83 −0.61
charge C1′ −0.01 0.21 0.41 0.02 0.51
charge N9 0.09 −0.39 −0.44 −0.59 −0.36
charge O4′ −0.43 −0.21 −0.22 −0.20 −0.50
charge O5′ −0.67 −0.67 −0.67 −0.70 −0.65
charge N7 −0.36 −0.44 −0.50 −0.43 −0.36
ribose pseudorotational phase (°) 34 330 160 90 277
(C3′-endo) (C2′-exo) (C2′-endo) (O4′-endo) (O4′-exo)
dihedral O4′-C1′-C2′-H1′ (°) 100 136 −177 −167 −159
dihedral O5′-C5′-C4′-O4′ (°) 77 75 73 102 90