Table 1.
A. Crystal information | ||
Data set | Native | NGT |
Space group | C2 | C2 |
Solvent content (%, v/v) | 50.7 | 50.7 |
Matthew’s coefficienta | 2.5 | 2.5 |
Molecules/asymmetric unitb | 4 (4044) | 4 (3933) |
Residues/asymmetric unit | ||
B. Data collection | ||
Unit cell dimensions | ||
a (Å) | 321.1 | 322.2 |
b (Å) | 110.5 | 109.8 |
c (Å) | 129.7 | 132.8 |
β (deg.) | 90.9 | 91.5 |
Wavelength (Å) | 1.1158 | 1.1271 |
Resolution range (Å) | 40.00 – 2.80 | 35.0 – 3.25 |
High-resolution (Å) | 2.90 – 2.80 | 3.37 – 3.25 |
Total observations | 406,584 | 144,007 |
Unique reflections | 111,512 | 71,535 |
〈I/σI〉c,d | 9.7 (2.0) | 8.7 (1.9) |
Completeness (%)e | 99.4 (99.7) | 97.8 (97.4) |
B-value, Wilson plot (Å2) | 75 | 92 |
Multiplicity | 3.6 | 2.0 |
Rmergee | 0.089 (0.750) | 0.065 (0.475) |
C. Refinement | ||
Rworkf | 0.26 | 0.27 |
Rfreeg | 0.28 | 0.32 |
Number of atoms | 32,139 | 32,007 |
Water | 151 | 11 |
r.m.s.d from ideal | ||
Bond lengths (Å) | 0.006 | 0.009 |
Bond angles (deg.) | 0.818 | 1.09 |
Ramachandran plot | ||
Most favored (%)h | 2903 (86.0) | 2884 (85.5) |
Allowed (%) | 461 (13.7) | 481 (14.3) |
Generously allowed (%) | 13 (0.4) | 10 (0.3) |
Disallowed (%) | 0 | 0 |
VM, Å3/Da.
Z, the number of molecules in the unit cell.
Statistics for the highest resolution shell are in parentheses.
〈I/σI〉 is the ratio between the mean intensity and the mean error of the intensity.
Rmerge Σhkl Σ|Ij(hkl)−〈I(hkl)〉|ΣhklΣj j〈I(hkl)〉, with Ij(hkl) representing the intensity of measurement j and 〈I(hkl)〉 is the mean of measurements for the reflection hkl. Although the Rmerge in the outer shell is high, the appropriate resolution limits were deduced from the Wilson plot.
Rwork = Σhkl ||Fobs(hkl)|−Fcalc(hkl)||/Σhkl |Fobs(hkl)|, where Fobs and Fcalc are the observed and calculated structure factors, respectively.
Rfree is calculated in the same manner on 5% of structure factors that were not used in the model refinement.
Numbers in parentheses represent the percentage of residues in each area of the Ramachandran plot.