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. Author manuscript; available in PMC: 2010 Jul 26.
Published in final edited form as: J Mol Biol. 2006 Apr 27;359(4):913–929. doi: 10.1016/j.jmb.2006.04.004

Table 1.

X-ray diffraction data collection and atomic refinement

A. Crystal information
Data set Native NGT
Space group C2 C2
Solvent content (%, v/v) 50.7 50.7
Matthew’s coefficienta 2.5 2.5
Molecules/asymmetric unitb 4 (4044) 4 (3933)
Residues/asymmetric unit
B. Data collection
Unit cell dimensions
a (Å) 321.1 322.2
b (Å) 110.5 109.8
c (Å) 129.7 132.8
 β (deg.) 90.9 91.5
Wavelength (Å) 1.1158 1.1271
Resolution range (Å) 40.00 – 2.80 35.0 – 3.25
High-resolution (Å) 2.90 – 2.80 3.37 – 3.25
Total observations 406,584 144,007
Unique reflections 111,512 71,535
IIc,d 9.7 (2.0) 8.7 (1.9)
Completeness (%)e 99.4 (99.7) 97.8 (97.4)
B-value, Wilson plot (Å2) 75 92
Multiplicity 3.6 2.0
Rmergee 0.089 (0.750) 0.065 (0.475)
C. Refinement
Rworkf 0.26 0.27
Rfreeg 0.28 0.32
Number of atoms 32,139 32,007
Water 151 11
r.m.s.d from ideal
 Bond lengths (Å) 0.006 0.009
 Bond angles (deg.) 0.818 1.09
Ramachandran plot
 Most favored (%)h 2903 (86.0) 2884 (85.5)
 Allowed (%) 461 (13.7) 481 (14.3)
 Generously allowed (%) 13 (0.4) 10 (0.3)
 Disallowed (%) 0 0
a

VM, Å3/Da.

b

Z, the number of molecules in the unit cell.

c

Statistics for the highest resolution shell are in parentheses.

d

II〉 is the ratio between the mean intensity and the mean error of the intensity.

e

Rmerge Σhkl Σ|Ij(hkl)−〈I(hkl)〉|ΣhklΣj jI(hkl)〉, with Ij(hkl) representing the intensity of measurement j and 〈I(hkl)〉 is the mean of measurements for the reflection hkl. Although the Rmerge in the outer shell is high, the appropriate resolution limits were deduced from the Wilson plot.

f

Rwork = Σhkl ||Fobs(hkl)|−Fcalc(hkl)||/Σhkl |Fobs(hkl)|, where Fobs and Fcalc are the observed and calculated structure factors, respectively.

g

Rfree is calculated in the same manner on 5% of structure factors that were not used in the model refinement.

h

Numbers in parentheses represent the percentage of residues in each area of the Ramachandran plot.