Table 1.
Transposable elements in Gallus gallus
| TE | Total | Intronic | TEs in introns within RefSeq | TEs in introns of non-RefSeq | Exons within RefSeq alignments* | Exons in non-RefSeq alignments† |
|---|---|---|---|---|---|---|
| SINE | 27 | 10 (37%) | 1 | 9 | 0 | 0 |
| LINE | 188,302 | 65,035 (34.5%) | 14,482 | 50,553 | 8 | 45 |
| LTR | 28,719 | 7,553 (26.3%) | 1,501 | 6,052 | 0 | 8 |
| DNA | 20,808 | 6,554 (31.4%) | 1,446 | 5,108 | 1 | 8 |
| Total | 237,856 | 79,152 (33.2%) | 17,430 | 61,722 | 9 | 61 |
*Number of exons found within annotated RefSeq genes. †Number of exons for which ESTs are not found within annotated RefSeq genes.