Table 2. Validation of potential HSF1 regulators using RNAi.
Firefly Luciferase Promoter | Directional FDR Corrected | ||||
(log2Ratio vs. SCRAM_1)a | p-valueb | ||||
siRNA Duplex | HSP70B | TK | CMV | HSP70B vs.TK | HSP70B vs.CMV |
PSMD3_1 | −1.06±0.20 | −1.23±0.53 | −0.99±0.61 | 0.35 | −0.4 |
PSMD3_2 | −1.36±0.27 | −1.53±0.53 | −1.38±0.49 | 0.35 | 0.43 |
ZCCHC12_1 | −2.25±0.31 | −2.06±0.37 | −1.96±0.42 | −0.32 | −0.25 |
ZCCHC12_2 | −1.59±0.27 | −1.43±0.10 | −1.37±0.21 | −0.24 | −0.2 |
HMX2_1 | −1.33±0.31 | −1.00±0.32 | −0.84±0.53 | −0.18 | −0.17 |
HMX2_2 | −1.56±0.24 | −1.12±0.53 | −1.01±0.45 | −0.18 | −0.099 |
JMJD2C_1 | −0.48±0.23 | −0.89±0.34 | −0.99±0.24 | 0.12 | 0.05 |
JMJD2C_2 | −1.31±0.10 | −2.17±0.86 | −2.16±0.76 | 0.12 | 0.09 |
PRKCI_1 | −0.18±0.05 | 0.26±0.04 | 0.42±0.20 | −0.00016 | −0.0064 |
PRKCI_2 | −0.77±0.15 | −0.12±0.35 | −0.21±0.30 | −0.038 | −0.039 |
KCTD10_1 | −0.52±0.23 | −0.28±0.23 | −0.29±0.13 | −0.18 | −0.14 |
KCTD10_2 | 0.39±0.29 | −0.05±0.12 | 0.18±0.22 | 0.064 | 0.24 |
KIAA1826_1 | −0.05±0.22 | −0.35±0.25 | −0.22±0.35 | 0.14 | 0.31 |
KIAA1826_2 | −0.07±0.21 | −0.13±0.17 | 0.02±0.29 | 0.36 | −0.36 |
GTSE1_1 | −0.47±0.17 | −0.83±0.53 | −0.82±0.55 | 0.21 | 0.22 |
GTSE1_2 | 0.01±0.14 | −0.13±0.12 | −0.11±0.24 | 0.17 | 0.3 |
SCRAM_2 (neg.) | −0.05±0.18 | −0.26±0.17 | −0.14±0.23 | 0.15 | 0.35 |
HSF1_1 (pos.) | −2.40±0.22 | 0.01±0.19 | 0.11±0.29 | −0.00012 | −0.00021 |
HSF1_2 (pos.) | −3.37±0.25 | −0.13±0.32 | −0.04±0.24 | −0.00012 | −0.000078 |
Mean ± SD for 4 biological replicates.
Statistical significance between the HSP70B reporter and the TK and CMV reporters was calculated using a two sample t-test. The p-values were corrected for multiple comparisons using false discovery rate. Negative p-values denote a reduction in activity versus the control reporter. SCRAM_1 and SCRAM_2 denote negative RNAi controls. HSF1_1 and HSF1_2 denote positive RNAi controls for the reduction of HSF1 activity.