Table 3.

A Summary of the Genetics of Fitness Recovery of Hybrid Phages

Lineage	Nucleotidea	Change	Gene	Amino Acide	Change	Order	Convergent	Parallel
ID12-ID2Fa	1585	A → G	Bc	104	T → A	1	Yes	Yes
	2044	C → T	D	23	Silent	2 or 3	No	No
	2312	C → T	Dd	113	R → C	2 or 3	No	Yes
ID12-ID2Fb	1585	A → G	Bc	104	T → A	2	Yes	Yes
	1958	A → G	C	80	N → S	4	No	No
	2312	C → T	Dd	113	R → C	1	No	Yes
	2562	T → C	F	3	V → A	5	No	No
	4964	C → T	H	150	T → I	3	No	No
ID2-ID12Fa	2298	A → G	Dd	111	I → V	2	Yes	No
	2305	A → G	D(E)	113(54)	Q → R(S → G)	4	Yes	Yes
	3198b	A → G	F	217	D → G	1	No	No
	4037	C → T	G	36	L → F	3	No	No
	4684	C → T	H	69	P → L	5	No	Yes
ID2-ID12Fb	482	A → G	A	142	I → V	3 or 4	No	No
	2305	A → G	D(E)	113(54)	Q → R(S → G)	1 or 2	Yes	Yes
	3468	A → G	F	307	N → S	3 or 4	Yes	No
	3611	C → T	F	355	P → S	1 or 2	No	No
	4684	C → T	H	69	P → L	5	No	Yes

^aID12 and ID2 differ in length, and therefore nucleotide positions are not directly comparable across these two genotypes.

^bArose in plaque used to start the lineage.

^cSilent in gene A.

^dSilent in gene E.

^eAmino acid positions are based on the ID12 sequence.