Table 4.
Sensitivity of TaqMan PCR for detection of oprL and the AES-I HW2 locus
DNA per reaction (ng) | Genome equivalents/reationa | oprL | HW2 | ||
---|---|---|---|---|---|
Average Ct TAMRAb,d | Standard Deviation | Average Ct FAMc,d | Standard Deviation | ||
1000 | 2.2 × 108 | 25.44 | 1.99 | 16.30 | 0.47 |
100 | 2.2 × 107 | 29.13 | 3.19 | 19.57 | 0.27 |
10 | 2.2 × 106 | 32.77 | 2.86 | 23.00 | 0.68 |
1 | 2.2 × 105 | 35.18 | 2.23 | 26.40 | 0.95 |
0.1 | 2.2 × 104 | 37.47 | 1.04 | 30.19 | 0.90 |
0.01 | 2.2 × 103 | - | - | 33.23 | 0.84 |
0.001 | 2.2 × 102 | - | - | 36.70 | 1.46 |
a based on weight of P. aeruginosa PAO1 genome of 4.5 fg
b oprL correlation coefficient r2 = 0.9865, amplification efficiency = 114.84%
c HW2 correlation coefficient r2 = 0.9996, amplification efficiency = 96.84%
d Fluorescent dye used for primer labeling; see Materials and Methods.