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. 2010 Jul 30;5(7):e11898. doi: 10.1371/journal.pone.0011898

Figure 2. Median joining network of 56 ancient Danes.

Figure 2

Median joining network relating the 56 ancient HVR-1 sequences (nt 16064–16405) genotyped for mtDNA haplogroup defining coding region substitutions. The samples are from the Danish Medieval Age: Riisby (R:10 individuals), Danish Viking Age: Galgedil (G:11 individuals) and Kongemarken (K:Eight individuals), Danish Roman Iron Age: Bøgebjerggård (B:Seven individuals), Skovgaarde (S:11 individuals) and Simonsborg (Si:Six individuals), Danish Early Bronze Age Bredtoftegård (Bt: One individual) and Danish Neolithic Age Damsbo (D: Two individuals). Sample codes correspond to Tables 1, 2, 3, haplogroups are shown in grey front and the blue and black sample codes correspond to published data (black) and unpublished data (blue). Variable sites are shown along the branches of the network. Substitutions at nucleotide positions 11719, 14766 and 10238 (shown in parentheses) were inferred from the haplogroup tree drawn using completely sequenced mtDNA genomes [34], [59], [60]. Reticulations between haplogroups, e.g. R0a vs. JT (16126 parallelism) and U1 vs. U7 (16189 parallelism) were solved manually considering phylogenetic analyses based on complete sequence data. L3 is used as the root.