Table 2.
Contribution of different terms to side chain prediction accuracy
| Side chain RMSD, Å | |||
|---|---|---|---|
| All | Buried | Exposed | |
| EScSc, EScMc, Erot, Elj | 1.47 | 0.73 | 1.72 |
| Erot, Elj | 1.52 | 0.77 | 1.78 |
| EScSc, EScMc | 2.28 | 1.39 | 2.61 |
| EScSc, Erot | 1.87 | 1.36 | 2.05 |
| EScSc, Elj | 2.04 | 0.97 | 2.41 |
| Elj | 2.13 | 1.04 | 2.51 |
| Erot | 2.25 | 2.05 | 2.29 |
The contribution of the different term to Hunter was evaluated by rebuilding side chain conformations on a test set of 94 proteins. The full rotamer library was used with Hunter (see Methods for details).